BAC Information

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BAC

Clone NameMSMg01-321G24
Chromosome9 (Build37)
Map Location 39,289,349 - 39,289,861
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1
Downstream geneOlfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321G24.T7 (MSMg01no321_g24.b1)MSMg01-321G24.TJ (MSMg01no321_g24.g1)
ACCAG440407AG440408
length757754
length of high quality
(start - end)		294 (67 - 360)628 (69 - 696)
definitionCHROMAT_FILE: MSMg01no321_g24.b1 PHD_FILE: MSMg01no321_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:10 2005CHROMAT_FILE: MSMg01no321_g24.g1 PHD_FILE: MSMg01no321_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTTCAATGTAACAGAGACATCCTTATTCCTCAAGCTGTAGATCAATGGGT
TCAGCATAGGTACAACAGCACCATAAAACACAGAGGACACTTTCCCTTGG
TCCACCAAACTCACTGATGAAGGCTGTAAGTATGTGAATGCAGTAGAACC
ATACAAGATAGCAACAGCAGAGATGTGGGAACTGCAAGTACTGAAGGCTT
TGAACTTGCCCTCACTGGAGCGAATACGGAGGATGCTGGCAATGATGAAG
ATGTAGGAAGTAATAACAGTCAGCATTGGGACACAGATGTTTACTGAACC
AAAAAATAGAATTTTTATTTCATTGATACACGTATTAGAGCATGCAAGTT
TCAACAGGGGAAGAACACCACAGAAATAGAGATTGATCACATTTAACTTG
CAGAACTGAATCCTAATTATAAAGCCGGTGTTTACTGATGCACAGAACAC
AGCATAAATATACACCCCTGAAATCAAGGAACTGTAAATCTGATAGGACA
TGGTTACATTGTAACGTAGGGGGTTACAAATGGCAACATAGCGGTCATAT
GCCATTACAGCTAATGTGTAGCACTCTGCAGTTCCAAAACTGATGAAGAA
GTAGAGCTGAACCATGCATCCAGAGTAGGAGATGATGTTCTTCTTTGTCA
GAAGGCTCACCAACATTTTAGGGGTAACAACTGTGGACTGACAGAAGTCA
ATGAAGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTGAGAATTGGATACAAGGCATTTGTTTTA
CATTCACTTGACTTCAGCTTGTCTCTGTCCTTGTATTTTGTGAGAGGCTC
AGTATAAGTATAGTGGGCTGCTTCTAGCTAAGATATAAAACATACTTTTG
CATGATGCACTGAAGAGCAGTCTTGGTGATGAGAAACAGTCTGTATCCCA
AGGTAGAATACTTTGAAAGGTTTATGTGGATATAATTTTCATCATATTAC
TCAAGAATACCCAGTAACCTTTTATTATAATGATATGTAATAGGTAAAAA
ATATTCGTTGTGGAATTAATTTTTACCTTATTTTCTTGTTGAATATTTTA
TTTATTTACATTTCAAGTGCTATCTCCTTTCCTGCCTTTCCTTCTGGAAA
CCCCCTATTCCATCCTCCCTGCCCCTTTCCCACCTACCCACTTCCAAGTC
ACCACCCTGGCATTACCCTTTTGAAGCACTTATACTTACATAGAAACTAT
TAAAAGTAGTCAGAAGAGTAAACATGTTCCACTCTTTTCAGCGATTATGA
TAACCACAGAAAGAGACAAAAAATATTAACATAAGCATCAGATTGATTCT
AAAATAGGGAATTGAAACACTAAAATGAGGAAGACAATTACTCCAAGGAC
AGAGTAGCATCATGAAGAAGACATGAGCTAACATATAGGAGTTATCAAAC
ACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_g24.g1 MSMg01no321_g24.g1 CHROMAT_FILE:
MSMg01no321_g24.g1 PHD_FILE: MSMg01no321_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:10 2005
         (628 letters)



>mm_chr9_39289349_39290380
          Length = 1032

 Score =  934 bits (483), Expect = 0.0
 Identities = 504/513 (98%), Gaps = 5/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgagaattggatacaaggcatttgttttacattcacttgacttcagcttgtctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cattgagaattggatacaaggcatttgttttacattcacttgacttcagcttgtctctgt 454

                                                                       
Query: 61  ccttgtattttgtgagaggctcagtataagtatagtgggctgcttctagctaagatataa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 453 ccttgtattttgtgagaggctcagtataagtatagtgggctgctcctagctaagatataa 394

                                                                       
Query: 121 aacatacttttgcatgatgcactgaagagcagtcttggtgat----gagaaacagtctgt 176
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 393 aacatacttttgcatgatgcactgaagagcagtcttggtgatgagagagaaacagtctgt 334

                                                                       
Query: 177 atcccaaggtagaatactttgaaaggtttatgtggatataattttcatcatattactcaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atcccaaggtagaatactttgaaaggtttatgtggatataattttcatcatattactcaa 274

                                                                       
Query: 237 gaatacccagtaaccttttattataatgatatgtaataggtaaaaaatattcgttgtgga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaatacccagtaaccttttattataatgatatgtaataggtaaaaaatattcgttgtgga 214

                                                                       
Query: 297 attaatttttaccttattttcttgttgaatattttatttatttacatttcaagtgctatc 356
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 213 attaatttttaccttattttcttgttgaatattttatttatttacatgtcaagtgctatc 154

                                                                       
Query: 357 tcctttcctgcctttccttctggaaaccccctattccatcctccctgcccctttcccacc 416
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 153 tcctttcctgcctttccttctggaaaccccctattgcatcttccctgcccctttcccacc 94

                                                                       
Query: 417 tacccacttccaagtcaccaccctggcattacccttttgaagcacttatacttacataga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tacccacttccaagtcaccaccctggcattacccttttgaagcacttatacttacataga 34

                                            
Query: 477 aactatt-aaaagtagtcagaagagtaaacatg 508
           ||||||| |||||||||||||||||||||||||
Sbjct: 33  aactattaaaaagtagtcagaagagtaaacatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1032
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1022
Effective search space:   631596
Effective search space used:   631596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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