Query= MSMg01no321_j03.b1 MSMg01no321_j03.b1 CHROMAT_FILE:
MSMg01no321_j03.b1 PHD_FILE: MSMg01no321_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:20 2005
(371 letters)
>mm_chr9_70318641_70319411
Length = 771
Score = 661 bits (342), Expect = 0.0
Identities = 357/362 (98%), Gaps = 2/362 (0%)
Strand = Plus / Minus
Query: 1 gaattcaattattttaagca-aatctaataaatttaggttcaagagtagatgcttatttt 59
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaattcaattattttaag-ataatctaataaatttaggttcaagagtagatgcttatttt 303
Query: 60 agtgtttgatttctgtgattgttcagtgacccctacttgacccacccactgatttactta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agtgtttgatttctgtgattgttcagtgacccctacttgacccacccactgatttactta 243
Query: 120 tttttgttcattttaattttttttggtaattattccacttcatttattttattattttat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttttgttcattttaattttttttggtaattattccacttcatttattttattattttat 183
Query: 180 tgtatattttgcttagatacatgttgtgcactgtgtatatgtagtgtcaccagagaaggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgtatattttgcttagatacatgttgtgcactgtgtatatgtagtgtcaccagagaaggg 123
Query: 240 gattagatttccctagaactagagttacagatttgtgagccatcatgtgtgtcctgaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gattagatttccctagaactagagttacagatttgtgagccatcatgtgtgtcctgaaat 63
Query: 300 ttaatttgaatacaggttctctttcctttttttttttttttaaaaaagaataaaaatttg 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 62 ttaatttgaatacaggttctctttccttttttttttttttttttaaagaataaaaatttg 3
Query: 360 gg 361
||
Sbjct: 2 gg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_j03.g1 MSMg01no321_j03.g1 CHROMAT_FILE:
MSMg01no321_j03.g1 PHD_FILE: MSMg01no321_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:20 2005
(290 letters)
>mm_chr9_70139219_70139908
Length = 690
Score = 485 bits (251), Expect = e-141
Identities = 278/287 (96%)
Strand = Plus / Plus
Query: 1 gtgtgaagcttttcacactcatctgctccaactgtctctagatttcttctcctcaaaggc 60
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 gtgtgaagcttttcacactcatctgctccaactgtctctagacttcttttcctcaaaggc 260
Query: 61 cactctcagatgtgtttggcatttttaatccttcagttaggagctcaggctgtcctgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactctcagatgtgtttggcatttttaatccttcagttaggagctcaggctgtcctgcca 320
Query: 121 gagcagcagttgccagaggcagtgtgtccttagtcgttcagagagatgcttggctctagg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gagcagcagttgccagaggcagtgtgtccttagttgttcagagagatgcttggctctagg 380
Query: 181 cagacaggtcacagggagtggacagcacgctgggtgagacattagtcttgtgactggagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacaggtcacagggagtggacagcacgctgggtgagacattagtcttgtgactggagc 440
Query: 241 caagatttttttttctggctcagactgtccccaaatatatggctttg 287
||||| || ||||||||||||| |||||||||||||||||||||
Sbjct: 441 caagagcttgagttctggctcagaccgtccccaaatatatggctttg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
