BAC Information

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BAC

Clone NameMSMg01-321K23
Chromosome9 (Build37)
Map Location 82,385,648 - 82,385,887
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321K23.T7 (MSMg01no321_k23.b1)MSMg01-321K23.TJ (MSMg01no321_k23.g1)
ACCAG440590AG440591
length762755
length of high quality
(start - end)
243 (124 - 366)594 (72 - 665)
definitionCHROMAT_FILE: MSMg01no321_k23.b1 PHD_FILE: MSMg01no321_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:29 2005CHROMAT_FILE: MSMg01no321_k23.g1 PHD_FILE: MSMg01no321_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCTTCTGCTTACACACCTGGGCTATGAAGCATTACTGAGCTACAAAAGAA
AATCACACAAATGTTCACAACCCTGTTCATCACAGCCACAAGGTCTAGAA
AAGTAACCCAAACATTTTCATGTGCACTCATGTATTAATAGGCTCTTCAT
GCTCCTAAAATAATAGGTAAGCAAATATGGTCTTTACATACTTGGCAGCA
AAAAAAGATTGGAGGATTTCTGTATGTGACTGCATAGATGACCCTCAGGA
AGTCATGCTGGTCAAAAGAAGTGACTAAGAAATGACACATGCTACATTAA
TCAATCGATTTGATTTATTCTATATCACCACCCCTCTATATAGAGAGACT
TATCTAAAGGTTTTTTAAACATTAAGTTAGAGAAATATAAAACGGTAGAT
AATAGATCTTTTTGAAATACATATACTATAAAAATTGTAATATTTATGCA
ACTCTATGAGTTCCAGATTAGCTTCAGTGGAAACTTTCTTTTCAAATTAA
TGTATTTATTCACTTTATATCTTATTATCAGCTCCCCCCCTCTTTTTCGC
ACATCTCTCACACAGATTGCCTCTATTCCTTGCTCCCCTTCTTCTCTGAG
AATATTAGGCACACTCTTCATCTGAATCCTAGTCCAGGCCCGCCCATTTT
GTACAATTTGATTCCCTAGACCTGCCTTTACATTCTCTTTAGTACCTCCT
CTCCCCCTTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAACACATCAAAACAATCATCCATCCT
GACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAATATATGGAA
ATCCATCAACGTAATTCACTATATAAATAAACTCAAAGACAAAAACCTGA
TCATTTTGTTAGATGTGGAGAAAGCATTTGACAAAATCCAACACCCATTC
ATGATAAATGTCTCTAAAAGATCAGGAATTCAAGGCCCATACCTAAACAT
GATAAAAGCAATCTACAACAAACCAGTATCCAACATCAAAGTAAATGGTG
AGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCA
CTTTCTCCCTACCTCTTCAACATACTACTTGAAGTCCTAGCCAGAGCAAT
TGGACAACAAAAGGAAATCAAGAAGATACAAATTGGAAAGGAAGTATTCA
AAAATATCACTTTTTGCAGATGATATGATAAAATATATAAATGACCCTAA
AATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCAATGCAGTAGC
TGGATATAAAATTAACTCAAAAAAGTCAATGACCTTTGCCTACAGAAAGA
ATAACCAGGCTGAGAATTAAATTAGGGAAACAACACCCTTCACAATAGTC
ACAAATAATGTATAATATCTTGACGCGACTCTAACTAAGGAAGTGAAAGA
TCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_k23.b1 MSMg01no321_k23.b1 CHROMAT_FILE:
MSMg01no321_k23.b1 PHD_FILE: MSMg01no321_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:29 2005
         (243 letters)



>mm_chr9_82385448_82386090
          Length = 643

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcatcacagccacaaggtctagaaaagtaacccaaacattttcatgtgcactcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgttcatcacagccacaaggtctagaaaagtaacccaaacattttcatgtgcactcatgt 381

                                                                       
Query: 61  attaataggctcttcatgctcctaaaataataggtaagcaaatatggtctttacatactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attaataggctcttcatgctcctaaaataataggtaagcaaatatggtctttacatactt 321

                                                                       
Query: 121 ggcagcaaaaaaagattggaggatttctgtatgtgactgcatagatgaccctcaggaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcagcaaaaaaagattggaggatttctgtatgtgactgcatagatgaccctcaggaagt 261

                                                                       
Query: 181 catgctggtcaaaagaagtgactaagaaatgacacatgctacattaatcaatcgatttga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatgctggtcaaaagaagtgactaagaaatgacacatgctacattaatcaatcgatttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)