Query= MSMg01no321_m10.b1 MSMg01no321_m10.b1 CHROMAT_FILE:
MSMg01no321_m10.b1 PHD_FILE: MSMg01no321_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:35 2005
(298 letters)
>mm_chr9_18211815_18212512
Length = 698
Score = 503 bits (260), Expect = e-147
Identities = 281/292 (96%), Gaps = 9/292 (3%)
Strand = Plus / Plus
Query: 1 agtgttaaaataatggatatatgtatagtttttacattgttttacttaaccccaa----t 56
||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 201 agtgttaaaataatggatatatgtatagtttttacattgttttacttaa----aaataat 256
Query: 57 ttgcagtgttctcaaatattcagaagtttactcttaagatttttccctcaggagaatgag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgcagtgttctcaaatattcagaagtttactcttaagatttttccctcaggagaatgag 316
Query: 117 tctgttgcagggatgaccccttttataggttatccaacacagagcatctatccctgaaac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctgttgcagggatgaccccttttataggttatccaacacagagcatctatccctgaaac 376
Query: 177 tatctatacacaaacaacaacggactcagcaaattgcttataacatagactagttaagtt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 377 tatctatacacaaacaacaacggactcagcaaattgcttataacatagactagctaagtt 436
Query: 237 tcagggcacatttttttaaaaaaattatgagaatattcagagtgttcttttg 288
|||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 437 tcagggcacatttttt-aaaataattatgagaatattcagagtgttcttttg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_m10.g1 MSMg01no321_m10.g1 CHROMAT_FILE:
MSMg01no321_m10.g1 PHD_FILE: MSMg01no321_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:36 2005
(550 letters)
>mm_chr9_18368939_18369888
Length = 950
Score = 917 bits (474), Expect = 0.0
Identities = 531/550 (96%)
Strand = Plus / Minus
Query: 1 tagacacgtagtttagtaactgaataatctcccaaggttcctcactttcttttaataaag 60
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 750 tagacatgtagtttagtaactgaataatctcccaaggttcctcacttccttttaataaag 691
Query: 61 cataactgtaggcagtccagtcttgagtaaagcatctctccaatggcaaagttaactttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cataactgtaggcagtccagtcttgagtaaagcatctctccaatggcaaagttaactttt 631
Query: 121 taagtttttaccattttatttttgttgttcatatttgcatcaaatcaatgaatttttaag 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 taagttcttaccattttatttttgttgttcatatttgcatcaaatcaatgaatttttaag 571
Query: 181 caaagttcaaatgactagaaggctaaaatagtttacactttttagacccaacatatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 caaagttcaaatgactagaaggctaaaatagtttacactttttagacccaacatatgctt 511
Query: 241 caaacattatctaagtagaatgggagataacatcttttggaagacaaacttagaaactct 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 510 caaacaaaagctaagtagaatgggagataacatcttttggaagacaaacttagaaacttt 451
Query: 301 aatttagtattttaagatatttggtagcagagagcttgacccccgcccacagttgcctct 360
||| ||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||
Sbjct: 450 aatctagtattttaagatattgggtagcagagagcttgattcatgccaacagttgcctct 391
Query: 361 tgttgacactctttctcttgaatgtttctacaggttacacatattcagcctcaagtatct 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 390 tgttgacactctttctcttgaatgtttctacagattacacatattcagcctcaagtatct 331
Query: 421 tccataatggtgagtattgcagactcctacgcgtcactggttgcctccattctcctaaga 480
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 330 tccataatagtgagtattgcagactcctacatgtcactggttgcctccattctcctaaga 271
Query: 481 catatgagatgatggatggaccaacatgttcttctattatccactttaaatggacagaag 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 catatgagatgatggatgaaccaacatgttcttctattatccactttaaatggacagaag 211
Query: 541 tttaaaatgg 550
||||||||||
Sbjct: 210 tttaaaatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
