BAC Information

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BAC

Clone NameMSMg01-322D12
Chromosome9 (Build37)
Map Location 34,763,412 - 34,763,654
singlet/doubletsinglet
Overlap geneKirrel3
Upstream genenone
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322D12.T7 (MSMg01no322_d12.b1)MSMg01-322D12.TJ (MSMg01no322_d12.g1)
ACCAG440975AG440976
length719713
length of high quality
(start - end)
245 (49 - 293)189 (106 - 294)
definitionCHROMAT_FILE: MSMg01no322_d12.b1 PHD_FILE: MSMg01no322_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:08 2005CHROMAT_FILE: MSMg01no322_d12.g1 PHD_FILE: MSMg01no322_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCAAATGCGAGAGAGACCGCGGAATTCCTTTATTTACGACAAAAGTG
TTTCACTGCCACTGTCTGGACCTTTTAGTATGCTCTTTGGATGCTGACCT
ATTTTTGCAGCTGGTGTGCATGGCATGGCGTTGACATTACTAAGGTCACA
TTAGGCTCTGACTCCTCTTGTAACAGTCTATACACTCTGGATCATATCGT
GACATGCCCCCGGCACATCAAGATCTTGATAATGGGTTTGCAGGCTACAA
CAGAGTTTGGTTGTTACTCAATGACTTCTGCTGTCTGTGACTCCTTTTGC
AACAAGGCTACCACCCTGGAGGTAGCACCGAGTCTTTATATTTTCTCTGC
ACTCCTGATCCAGGCTGATATTCCACTGGTGGGGAGAGTTGCATCCGTAT
AGCCATGATACACTGTGTGGTGGAGATACTGATTATAGGGGGACATCTTG
ATGTGACTCTAGGTCTTCTCCCTCAGATATGCCCCCCAGTTTCTGGAGCT
CTGCCCCGGGATAAGATTCTCTATTTGTCGTAAAAATCACCTTGTCCCTG
TTAAATCAGGTATCTTGGTCAAACTCCGTGTCTGCTTGAATTCTTCCATG
ATACAGATGTGTTTACCCACTTTCATTAAGCTTATACTCTCATTCTCAAT
TGCTATACACAAAACCCCATCTCTGCCCAGTCCTGTTTTTCTGCTCTTGA
GATTCTGCGAAACTAAATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTTACCCATCATGGACACCTATTCATTCCCTGTGCAGCCTTGT
GCCGTCTAACTGGCAGATTATGTTTTTGTCCTAACCTGTCATTCCTTTGA
GATCCTCTGCTGACACCCAGGTGGCCAGGGAACAGTGAGAGGCAGGCAGA
CAGGCAGGCAGGCAGGCAGGCGACTACATGCAATAACATGATAGAGTCAA
AGATGGCAACTTCAGATGTGGGCACCAGAGGAACTGGATAACAAGATGTT
CCTACCCATCTCCCAGCTGGCTTTGGATGGGATAATTATTTATGNTTACC
CTCGCCCCCCCCCAGGTGAGATGGAATATGTTGACAGGAAGCTGTACCCC
ACAGAGACTGAACTTCCTCCTTCACAGCATAGGAAAGTCCCCCATTGCCC
CGTGATCTACACACGAACACACACACACTCACACACACTCACTCACATAC
ACTTACACTCACCTAGAGAGATAGAGACATATATCATGAGTTCAATACTG
TAGCCTCAGGTAGCCCATTTGGCTTCATGTCCTGATTATCCTCTGGGTTG
TTATGTATCCACCTCCGCGGCCCTTTTTTTTCCCCTTTGGTTGCCTACAG
CAAACTTCTCCTGCGTATCGCTTTAATCTCCCAGGCATATCAAGAAAATT
GTAATTCCTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_d12.b1 MSMg01no322_d12.b1 CHROMAT_FILE:
MSMg01no322_d12.b1 PHD_FILE: MSMg01no322_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:08 2005
         (245 letters)



>mm_chr9_34763212_34763854
          Length = 643

 Score =  393 bits (203), Expect = e-114
 Identities = 234/245 (95%), Gaps = 2/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttcactgccactgtctggaccttttagtatgctctttggatgctgacctatttttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 443 tgtttcactgccactgtctggaccttttagtatgctctttggatgctg--ttatttttgc 386

                                                                       
Query: 61  agctggtgtgcatggcatggcgttgacattactaaggtcacattaggctctgactcctct 120
           ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 385 agctggtgtgcatggtatggggttgacattaccaaggtcacattaggctctgactcccct 326

                                                                       
Query: 121 tgtaacagtctatacactctggatcatatcgtgacatgcccccggcacatcaagatcttg 180
           ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 tgtaacagtctatacgctctggatcatatcgtgacatgcccacggcacatcaagatcttg 266

                                                                       
Query: 181 ataatgggtttgcaggctacaacagagtttggttgttactcaatgacttctgctgtctgt 240
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaacgggtttgcaggctacaacagagtttggttgttactcaatgacttctgctgtctgt 206

                
Query: 241 gactc 245
           |||||
Sbjct: 205 gactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 643
Length adjustment: 9
Effective length of query: 236
Effective length of database: 634
Effective search space:   149624
Effective search space used:   149624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)