BAC Information

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BAC

Clone NameMSMg01-322H07
Chromosome9 (Build37)
Map Location 57,449,323 - 57,449,516
singlet/doubletsinglet
Overlap geneCplx3
Upstream geneLingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3
Downstream geneLman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322H07.T7 (MSMg01no322_h07.b1)MSMg01-322H07.TJ (MSMg01no322_h07.g1)
ACCAG441148AG441149
length749747
length of high quality
(start - end)
194 (100 - 293)293 (56 - 348)
definitionCHROMAT_FILE: MSMg01no322_h07.b1 PHD_FILE: MSMg01no322_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:25 2005CHROMAT_FILE: MSMg01no322_h07.g1 PHD_FILE: MSMg01no322_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGAGGATCCGCGGAATTCTACAGGATCCCANCAAGTTTG
GCTCAGCCCTGGGCCCAGAGGAGGCCTGGAGCTACTGTTCTGTGCCCGCT
CCATCCCTGGCACTCTGCCCCTCACACAGCATTGCTCAGCTACCAGAATC
CACAGTGGCAGCTGTGTGATGCTGGGACTGCAGCTGCTGCCCTGCCCAAG
AAGGGATGTGGGCTCTATTCTGAGTGGCCAGGAATGCCAATCAGGAGAGA
ATTTTGGAAATCACTCAGTCCATTCCCATTTTACAGATGGTAAATTTCTT
AAAGAAGAAAAGCTTCTAGGATCATAAAGGTAGGGATTTTTTTTGGCCCT
CCCCCCCCCCAGAGGCTCTCCTAAGGGCCTCTGGGTGCTGCCACCCGGAG
GGGCTGAAAAACCAGGAGACGTGTGTCTGCGTGTGCCAGGATGCCATCTG
TGGCAAATGAGCCAGTGCTTCTGTGTCCTCTTGTGAGTGCTCTTGTGTGA
AGAACACGATGCTGTATCCACAATGGGCTGCGCTAATTCTATCAACTCGG
TGAAACTTTCCAGGCTTTCGTATGCACATAGGGTAGAATGGCAACTTTGT
TTTTCTTTTAGTATAGATATTACCCATTTCCCCCCCTTATTTTTCTTTTA
TTGTTTTTTTTTTTTCTTTCTCATTCCCCTTTTATTTCCTTATTCCCTCT
CCCTTTTTTATATCAATCACTCCTACTATCTTTTATTCCATCTCCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCCA
GAAATTCCCCTAACTGACAATAAAAGCTGGGCCTGGGAGTCCACTATGCA
TCTCCCCCCCCAAATGGGGAGACCCCTGCATGCAGGACATTCCGTTGAAG
TGTTTAGTTCTTTGCTTTTGCATACTATTTCAGTCCAGGGTATCATTTTT
TGGCAATTCTTGGACCCTAACAGTCTTCGGTTTCTATTGCTGTGAAGAAG
CACCATGACCAACTGGAGAGGAAAGGGTTTATTCAGCTACCACTTCCACT
TCACTGTTCATCGTGAAAGGAAGTCAGGGAAGGAACTCAAACCGGTTATG
TATCCTGACCCGCCCAGCTGATGCACAGGCCAGTGCCGCTCTCTGACTTC
CCCCNCATGGCTTGCTCAGCCTGCTTTCTCATAGAACTCAGGACAACCAG
CCAAGGGATGGCACCACCCATGGGCTGGATCCTCCCACGATCGATTACTA
ATTAAGACGATGCCCTACTAGCTTGCCTACAGCCTGATCTCATGTAGGCA
TTTTTCTCACCTGAGGCTCCTTGCTTTCTGATGACTCTAGCTTGTGACAA
GTTGAGATTAAACTATCCAGCACAACTGATCCCTTGTCATCCTGACATCA
CAACACATCATTGGTAAAACATGACTTCTTTCCTGATTTCGTTCCGTTTT
GACTTTCTAAGACCCGTTTTTCTCTTGTTTATCCCCCGGTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_h07.b1 MSMg01no322_h07.b1 CHROMAT_FILE:
MSMg01no322_h07.b1 PHD_FILE: MSMg01no322_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:25 2005
         (194 letters)



>mm_chr9_57449123_57449716
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatccctggcactctgcccctcacacagcattgctcagctaccagaatccacagtggc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 201 tccatccctggcactctgcccctcacacagcattgctcagctcccagaacccacagtggc 260

                                                                       
Query: 61  agctgtgtgatgctgggactgcagctgctgccctgcccaagaagggatgtgggctctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgtgtgatgctgggactgcagctgctgccctgcccaagaagggatgtgggctctatt 320

                                                                       
Query: 121 ctgagtggccaggaatgccaatcaggagagaattttggaaatcactcagtccattcccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagtggccaggaatgccaatcaggagagaattttggaaatcactcagtccattcccat 380

                         
Query: 181 tttacagatggtaa 194
           ||||||||||||||
Sbjct: 381 tttacagatggtaa 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)