BAC Information

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BAC

Clone NameMSMg01-322M02
Chromosome9 (Build37)
Map Location 33,834,319 - 33,834,652
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322M02.T7 (MSMg01no322_m02.b1)MSMg01-322M02.TJ (MSMg01no322_m02.g1)
ACCAG441363AG441364
length730736
length of high quality
(start - end)
614 (69 - 682)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no322_m02.b1 PHD_FILE: MSMg01no322_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:47 2005CHROMAT_FILE: MSMg01no322_m02.g1 PHD_FILE: MSMg01no322_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTCAAATTACAAATGATATCCCACAAAGCATGAATAAAGTATTT
TTTAATTAAAAAAAAAACACTGACCCCTATTTAGAAAGTGTTATAGATTT
TTTTTTAATATGTAAAAAGCCTGCTGGGCAGTGGTGGCACATGCCTTTAA
TTCCAGCACTTGAGAGGCAGAGGTAGGCAGATTTCTGAGTTCAAGACCAT
CCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACACAGAAACC
CTGTCTCTAAAACAAAAACAAAACAACAAACAACAACCAAACAAACAAAC
AAAAAAGGTAAAAGCCTTCAAACTTTCCAATAACTCCTCCATGAGTTCCT
AATCTCAGTCTAAGGTTGGCTATAGCTATCTGCTTCTGTCTCAGTCAACT
GCTGTTAGAGCCTCTCAGAGGACAGGAACTGAAAGGGATGGCAACCCTAT
GGAATGACCAACTGTGTCAACTAACCCCTGGGAGCTCCCAGAGACTAAGT
CACCAACCAAAAAGCATACAGAGGCTGGATCAAGGCCCACAGTACATGGC
ACATATGTAGCAGAGGATTGCCTTGCCTGGTATCAATGGGAGAGGATGCA
CTGTAGAGACTTGATGCCCTAGAAACGGGGATGCCCAGGGAGAGGGAAGC
ACCCCTTATAGGTGAAGAGGAGGAGAAATG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGTCGGGACCACAGGAAGAA
ACAGAATGAGAAGAAATACAACAGTAGAAGAGATAGAAGACACATTCACG
CACAGTCTTTTAACAGAGAAGACAGAAAAGTTCAGGATTCAACACAAAGC
CTTCACAATGGGCAGTGAAGAAGAGAACATGGTAGAAGCGGTTGAAGACA
ACCTTCCACTCTGCATGAAAAAGAAGGAAAAGTCTAAGTCAGCATGCACA
CTTGGACCTTACTAATGGCCCAGTATAAAACACTATGATGATCAAGAAGT
ACTCAGTACCTGAACTGTTTGAATTTGGGAGGGCTCTTGAATATCTAATA
AGTTGCTTGCCATCTGGATCACCACCCTGTGGGCAATGGCGAAAGATAGG
AGAGGTTTGAATGTTGCAGAGGCAGAGAAATATGGTGCTGTGGCCATCCA
CAACTCCTTGAGGCTAACGGGACGCAAGCCGTGGAAGCTGTAAGGGCATC
AGTTACTGGCTTACAGGAGCTGCTGATATTGTTTGCACCAGCAAGCAGAG
ATCCCAGTGGTGACCCTCAAACATAAAATTATTATTGCTATTTTATTTAT
TTATTTGTTTACATCCCAAACTCTGACCCCTTGCTAGTTCTCCCTCAAAG
ATTCCTTCTCTTATCCTTCCCTACCCCTTCTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_m02.g1 MSMg01no322_m02.g1 CHROMAT_FILE:
MSMg01no322_m02.g1 PHD_FILE: MSMg01no322_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:47 2005
         (347 letters)



>mm_chr9_33834319_33835065
          Length = 747

 Score =  600 bits (310), Expect = e-176
 Identities = 328/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaagtcgggaccacaggaagaaacagaatgagaagaaatacaacagtagaagagatag 60
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caaaagtctggaccataggaagaaacagaatgagaagaaatacaacagtagaagagatag 275

                                                                       
Query: 61  aagacacattcacgcacagtcttttaacagagaagacagaaaagttcaggattcaacaca 120
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 aagacacattcacacacagtcttttaacagagaaaacagaaaagttcaggattcaacaca 215

                                                                       
Query: 121 aagccttcacaatgggcagtgaagaagagaacatggtagaagcggttgaagacaaccttc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 214 aagccttcacaatgggcagtgaagaagagaacagggtagaagcggttgaagacaaccttc 155

                                                                       
Query: 181 cactctgcatgaaaaagaaggaaaagtctaagtcagcatgcacacttggaccttactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cactctgcatgaaaaagaaggaaaagtctaagtcagcatgcacacttggaccttactaat 95

                                                                       
Query: 241 ggcccagtataaaacactatgatgatcaagaagtactcagtacctgaactgtttgaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ggcccagtataaaacactatgatgatcaagaagtactcagtacctgaactgtttgaattt 35

                                             
Query: 301 gggagggctcttgaatatctaataagttgcttgc 334
           ||||||||| ||||||||||||||||||||||||
Sbjct: 34  gggagggcttttgaatatctaataagttgcttgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)