BAC Information

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BAC

Clone NameMSMg01-323E14
Chromosome9 (Build37)
Map Location 110,382,034 - 110,382,312
singlet/doubletsinglet
Overlap geneKif9
Upstream geneFbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18
Downstream geneSetd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E14.T7 (MSMg01no323_e14.b1)MSMg01-323E14.TJ (MSMg01no323_e14.g1)
ACCAG441751AG441752
length1,1791,413
length of high quality
(start - end)
322 (129 - 450)279 (130 - 408)
definitionCHROMAT_FILE: MSMg01no323_e14.b1 PHD_FILE: MSMg01no323_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:39 2005CHROMAT_FILE: MSMg01no323_e14.g1 PHD_FILE: MSMg01no323_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTCTNNNNNNGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTTTTTTTTAAAGATTCATTTAAAGCCCTATGTAAGTACACT
GTAGCTGTCTTCCCATATTCCACACCAGGGAGTCAGATCTCGTTACGGAT
GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGA
AGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCGAAT
TCTTTTTTTATAATAGTAGCTTGTTGCCCATGGAGGCTGGAAGAGAGCAC
TGAATCCTCTGGGACCTGAGCCACAGACATCTAAGGACCACCTTCTCAGT
GCTGAGAATTGAACCTGGGTCCTCTGGAAGAGTAGTGCTCTTATCTATTG
TACCATCCCTTCAGCCACCAATCCCCACCCCCACCCCCACCCCCACCCCT
TATTTCCACCCCGCCCTCTTTAAAGACTAGGTCTCGCTATGTAGCCCTGG
ATCTTCTGGAAACTCACTGTGTAGACCACGCTGCCTCTGCTTCTTGAGTA
CTAGGGTAAGAGGTTTGGGCTTCGTACCTAGCTCATGTCTGTCTCTGTAT
GAAGGCGCTTGTTGTCCTGTGGTATTCCTATCTAACTCTTGTCTGCCCTC
TGTTTGATAGTTGTTGTCGTCCTGTGCCATTCTTATTTATCTCACGCCTT
GCCTCTGTATGTATCGTGCTTGAGTTCTCTGTGCGATTTCAATCTTCATC
TCGTTTTTTTTTTTTTTTTTTTTGCCTTGTTTTTCTCTCTCTTCTTCTTC
TATTTAGTTGCTTTTTCTTTATGGGGTTTTTTCTTTCCTTACTTTTTTTT
TTTTGTCCTCTGTCGGGCCTTTCACTTGAGGAATTTTCTTTTATTGTTTC
CTCTTTATATTTCTTCCCTCTTTTTTTCCTCTCTTTCTATATTCTCTTAT
TTTTCCGTTTTCTATTGCCCCTTCTAGCTCTTTCTTTTTACATGTTCTTA
CTCTTCTCTCTTTTCTCTTTCTTCTACTCTCCTATTTATTGTTATACTAT
ATCCAATTTCTATCCTTCTATTTTCTTTTCTTCTTTTTATTATTCTTTTC
TTTCTCTTTATTCTTTGTTATTTCCATCTTACTATCTCTCTCAACTTATC
TATCTTCCTTTTTTCCTCTCCGTTTTGTC
CCGATCAANNNNNNGTCAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATAAAGTCCCTTGGGCTGGCCT
AGAACTCTGAGATCTGCCTGTCTCTGCCTCCCGAGTGTTGGGACTAAAGG
TGTGCGCCACCACCACTTGGCTTTTTGGAACTACTATTGCACAATGTACA
AAGTTTAAGTACAGAGAAGGTCCACAGAGCATGACATAGGCTTCACTGTA
CATTTCCCTTTAAATTGTCCCATCAGGGTTGGGCCAGTTTAAAAAGGAAT
GAAGCCCCTGCCCCTAAAGCAACCTGTAGTTTTAAAGGAGGAGGAGACAG
GGAAGGAGTAGGAGGGCAGGTAGACAGGTGAGCAGATGGGGACACGGGGT
TGGGGGGATGTTTTTTGAGNNNNNNNNNNNNNNNNNNTTTTTTTGTGGGT
GTTTGTCCCCCTCTTTTTTTTCCCCCCCCCCCCCTTCTTTGTTTTCCCTC
TCTTCAATGATGGTTTGGTTCTCTTTTTTTTCTCTCTTTTTCTTCCGCTT
TTTTCTATTTTCTTTTCTCCTGTTCTCTCTTTATTAGTTCTCTGCTTTTC
TTTTCTCTTACTCAATTACACTCCACGTTATTTTCTTAACATTATACTAC
TATTATTTACTATATATTTTAAACTATTTTCTAATTAAGTTATTCTCTCT
TCTACTTATTATCAATTTTATATAATATTAATTTATCTTCAGTTCCTCTC
CTTATCCATAATTCTTTAATTTACAATATATATTTCTATTATTTATATCT
TCTCTTTAAAATATTCCTACTATAATAAACATTATCTTATTTTTTTTATT
TAAAATTCTTTCAACATTCTCTTTATCCTTTACATCTCATTTAATCATAC
TCATCTTTCTACTCTTATTCTATACCTATTCTATATCTCCTTCTCATCTT
TATTTCTATATAATGACTCTATTATAACTTTCTTACACACAACTATATAT
TTATTTATCTCAATCTATATACATAATCTATCCTTATTTTCTTAATATCT
ATATCTTAATACTACCTTACTTTTTTTTTATTGTCTTATTTATATTTCTC
TTAATCTATATTACTTTCTCACACTTCACTACTTTACTATACATACATTT
TTCTATCTTTTAATTATAATCTTATTATTCTCACATTTTCTCATTTCTAT
CTCTATACTATCTCCTCTATCTACTCATTTCATCCTCTACTTCTCATTAT
ATTATTACATCATTATCATTCCGATGCTTTTCGTTTACTCTCTCTTCTTC
TCCTCTCTCATACTCCACAATTATAATAATTCTCTTTACACATCTTGAAT
ATACTATTTTTACTATAACTTATTAACTCTTATCATATCATCTTCTTATA
TATTTTACATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e14.g1 MSMg01no323_e14.g1 CHROMAT_FILE:
MSMg01no323_e14.g1 PHD_FILE: MSMg01no323_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:40 2005
         (279 letters)



>mm_chr9_110381786_110382464
          Length = 679

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccgagtgttgggactaaaggtgtgcgccaccaccacttggctttttggaactactattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cccgagtgttgggactaaaggtgtgcgccaccaccacttggctttttggaactactattg 468

                                                                       
Query: 61  cacaatgtacaaagtttaagtacagagaaggtccacagagcatgacataggcttcactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cacaatgtacaaagtttaagtacagagaaggtccacagagcatgacataggcttcactgt 408

                                                                       
Query: 121 acatttccctttaaattgtcccatcagggttgggccagtttaaaaaggaatgaagcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acatttccctttaaattgtcccatcagggttgggccagtttaaaaaggaatgaagcccct 348

                                                                       
Query: 181 gcccctaaagcaacctgtagttttaaaggaggaggagacagggaaggagtaggagggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcccctaaagcaacctgtagttttaaaggaggaggagacagggaaggagtaggagggcag 288

                                                  
Query: 241 gtagacaggtgagcagatggggacacggggttgggggga 279
           ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 287 gtagacaggtgagcagacggggacacagggttgggggga 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)