BAC Information

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BAC

Clone NameMSMg01-323F20
Chromosome9 (Build37)
Map Location 84,771,683 - 84,772,377
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892, Ibtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323F20.T7 (MSMg01no323_f20.b1)MSMg01-323F20.TJ (MSMg01no323_f20.g1)
ACCAG441807AG441808
length1,2951,290
length of high quality
(start - end)		684 (95 - 778)700 (91 - 790)
definitionCHROMAT_FILE: MSMg01no323_f20.b1 PHD_FILE: MSMg01no323_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:49 2005CHROMAT_FILE: MSMg01no323_f20.g1 PHD_FILE: MSMg01no323_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGGTTTTNNNNNNNACATTGGGCGCTATAXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTCATCTGCTTCAGAGCCTTTAAGAGCTGGCTTCC
TGAGCTCATCTAGTGATTCGTACTATTTCCTTCTCCTAGAGACCTCCGCT
AATTGATCTTTTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCC
CCAGGTATTCTTACCTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGG
AAAGGCCTGTATACTTATTTTGTGTACCATATTTCCTCTTTGCTCCTATT
CTCTCTCCCCGCTTTACTTCTGATAGACTGCCCTGAACTTCATCCAGAAT
TTTCAGCCCTATCTTAATCACTTGATAACATGTGAAAAGGAACAAAAGGG
CTCCTAACACTATTTAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATT
TCCCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAG
ACCAGACTTACCTTGTAAAGCTGTACTCACTGGTACCCCTGTTCCCCAGC
TGAAGAGTTCTGAATTCATGCAGTTGAATCCTTCTCAACAGTCTGTGATG
CGGGAACACTTTATTACCATCGTTCCCCAGCTGAAGAGTTCTGAATTCAC
GCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACCTTCATTACCAT
AACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATG
GTTAACTCCCGTCCCGAGTTTTCTTGTCCCGGGGTTTTTTCTTCCTGGAT
TTTCTCGTCCCGGGTTTCGGCACCAACTCTTACACGCGTTCTCACGACCG
GCCAGGAAGAACACAAACAAACAGAATCTTCTGCGGGAAAACTTTATTGG
TTACATCTTCGGAAGAAGAAAGGAAGCCCCCAACCCCCAAAAAAAAAAAG
CCCCTGGCTATATTTTTATTGACCAAAGGCCCCAACGGCCCAACGCCAAA
AAAAAAACTTATTGTTTTTTTTTTTTGTAACCGAAACCAGAACCCAAACC
CAAAGCAAAAGCGCCNGAGCGCAAGCAGAAAAAAAAAAGGGGGGAAACCC
CCCCCCTTTCGGGAAAAAATCTTCCCCTAGAAATTTCCCCCCCGATGTGT
GCGCCCGGGGGGAGTTGAGCCCGGAAAGGNAATATTTGTGGGGAAAAAAC
TTGTCCCCGCGCATTTTTTTTATCTTTAAACATGTTCCCCTCTTGTCGGA
AGGGGGGGCCCCCAAACTTCCTTCCGGATATTTTTTTTTTAATTT

NNNTCTTTCTTTTTNNNAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAACAACAAACTGGGTACT
TGGAAATGTGAAACCATCTGTGATTTCACATGCCGCAAGATGGCAACTAA
ATGATATCCAAAATTATGATTGAGAGTTTGTTTCTAGCAAGGAAAAGTAT
GTAAAATTGAGATGATGAGAGAAATGCCACTAAAGAACGATGTTATGAAA
CTATCCAAATTATCAGAGGGGAAGAGCATGACAGTAGTGAAAGATGAAAT
AATGTTGGGAGCCTGGGCATCTTTTCCTGATGAACTGGGATATTTTTGAA
GAACATGGCAGGATTATTTGTCACTGTAACAGTTTTATAATAGCACTGGT
TAAATTCTTGACTGAAATAACTACTCAATATATATCTTCCAACCTGAGTA
AAAATAAATACATAATTGACAAACAATCTTAATCTAAGACCTGAAATTGC
TAAAGAAAAATGGGTCATGTACTTCAAGCATATGAACAGGCAACCATTTT
AGGAAAAATACTATAGTGCAGGAAATAGCTCTAGAATTATGAAACAGAAT
TGCACGAAATAAAAAAAACTCCTGCGAAGGAAAGGAAATAAGTAGAATTA
ACAGACAGATAAGCAATAGAATGAGAAAAAACTTTGACAACTCTATAGTA
AACACAAGATTTACATATAGAATTTATAAATAAATGTCAAAATATGGTCC
AGAGAAATGAATCAACAGTTAAAAGCACTTGTTTCTCTTGTAGAAGACCC
AGATTTAGTTTTGGACAACCATATGGTAGCTCACAACAATCTGTATGTAG
TATTAAATACATGGGATCTGATGTTTTTCTTCTGGCTCCCTGGAAATCAG
CCATGTACGGGGATCACTTACATGCAAATGTGTGTGTATGTGGGGGGGGG
GCCCTTTATCTTATTGCTTTAAAAAAATTTTTTTTTTTCCATATTTTTTT
ATTTTTGTTGCAACCCTGTGAAAGCAAAACAAAGTTTCTCCAAAATTAAA
ATAAATTACCAATGATTCGCTAAATCCCCCCGAAAAATAAAAAGAATGAA
AGTTCTCTCCAAAAATTCTTCCCCCCCGTTGGTTTTCTTTTTTTCTTAAG
AAACCTTTTATTTGAAAAAATTATAAAAAGCCACCCCCTTCTTATAATAG
CAAAAGGCCAAAAAATCGGGCCCCCCTCCAATATTTTCAAATTACCCACA
GCACATTTTCTGGGAATATATCCTGGATGCTAAGAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_f20.g1 MSMg01no323_f20.g1 CHROMAT_FILE:
MSMg01no323_f20.g1 PHD_FILE: MSMg01no323_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:50 2005
         (700 letters)



>mm_chr9_84771479_84772577
          Length = 1099

 Score = 1253 bits (648), Expect = 0.0
 Identities = 684/696 (98%), Gaps = 1/696 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggtacttggaaatgtgaaaccatctgtgatttcacatgccgcaagatggcaactaaatga 64
           ||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||
Sbjct: 899 ggtacttggaaatgtgaaaccatttgtgatttcacatgttgaaagatggcaactaaatga 840

                                                                       
Query: 65  tatccaaaattatgattgagagtttgtttctagcaaggaaaagtatgtaaaattgagatg 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 839 tatccaaaattatgattgagagtttgtttctagcaaagaaaagtatgtaaaattgagatg 780

                                                                       
Query: 125 atgagagaaatgccactaaagaacgatgttatgaaactatccaaattatcagaggggaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 779 atgagagaaatgccactaaagaacgatgttatgaaactatccaaattgtcagaggggaag 720

                                                                       
Query: 185 agcatgacagtagtgaaagatgaaataatgttgggagcctgggcatcttttcctgatgaa 244
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 719 agcatgacagtagtgagagatgaaataatgttgcgagcctgggcatcttttcctgatgaa 660

                                                                       
Query: 245 ctgggatatttttgaagaacatggcaggattatttgtcactgtaacagttttataatagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctgggatatttttgaagaacatggcaggattatttgtcactgtaacagttttataatagc 600

                                                                       
Query: 305 actggttaaattcttgactgaaataactactcaatatatatcttccaacctgagtaaaaa 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 actggttaaactcttgactgaaataactactcaatatatatcttccaacctgagtaaaaa 540

                                                                       
Query: 365 taaatacataattgacaaacaatcttaatctaagacctgaaattgctaaagaaaaatggg 424
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taaatacataattgataaacaatcttaatctaagacctgaaattgctaaagaaaaatggg 480

                                                                       
Query: 425 tcatgtacttcaagcatatgaacaggcaaccattttaggaaaaatactatagtgcaggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcatgtacttcaagcatatgaacaggcaaccattttaggaaaaatactatagtgcaggaa 420

                                                                       
Query: 485 atagctctagaattatgaaacagaattgcacgaaataaaaaaaactcctgcgaaggaaag 544
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 419 atagctctagaattatgaaacagaattgcacgaaat-aaaaaaactcctgcgaaggaaag 361

                                                                       
Query: 545 gaaataagtagaattaacagacagataagcaatagaatgagaaaaaactttgacaactct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaaataagtagaattaacagacagataagcaatagaatgagaaaaaactttgacaactct 301

                                                                       
Query: 605 atagtaaacacaagatttacatatagaatttataaataaatgtcaaaatatggtccagag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atagtaaacacaagatttacatatagaatttataaataaatgtcaaaatatggtccagag 241

                                               
Query: 665 aaatgaatcaacagttaaaagcacttgtttctcttg 700
           |||||||||| |||||||||||||||||||||||||
Sbjct: 240 aaatgaatcagcagttaaaagcacttgtttctcttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1099
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1089
Effective search space:   751410
Effective search space used:   751410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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