Query= MSMg01no323_h04.b1 MSMg01no323_h04.b1 CHROMAT_FILE:
MSMg01no323_h04.b1 PHD_FILE: MSMg01no323_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:00 2005
(785 letters)
>mm_chr9_21527111_21528295
Length = 1185
Score = 1328 bits (687), Expect = 0.0
Identities = 735/769 (95%), Gaps = 28/769 (3%)
Strand = Plus / Plus
Query: 17 ggaattcttccattaataattataattattataactactgggtcctaccccccaaaccaa 76
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 245 ggaattcttccattaataattataattattctaactactgggtcctaccccccaaaccaa 304
Query: 77 gtaatgtttcttctttctaattaattaattaattaattaattaattaattaattaattag 136
||||||||||||||||||||||||||||||| |
Sbjct: 305 gtaatgtttcttctttctaattaattaatta----------------------------g 336
Query: 137 tacaggggagtgtgtgtggaagttagaggacaatttgctggagttagctctggttctctc 196
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 337 tacaggggagtgtgtgtggaagttagaggacaatttgctggagttggttctggttctctc 396
Query: 197 tccttccagtatgtggatccctgggatcaaactcaggtcttcaggcttgcaccctcaccc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tccttccagtatgtggatccctgggatcaaactcaggtcttcaggcttgcaccctcaccc 456
Query: 257 actgagccaactcgctcacccgcacacgccgccgcgttttatatacatttctcgctgagt 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actgagccaactcgctcacccgcacacgccgccgcgttttatatacatttctcgctgagt 516
Query: 317 gtttgtgtttatggacggatccagataaaacctgcaactgtactagggtcagaaatctat 376
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 517 gtttgtgtttatggacggatccagataaaacctgcaactgtacttgggtcagaaatctat 576
Query: 377 gtgcccattcctagacaggaaagcaaacttgctgcaagaagtgtaggggtcgggggtggg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtgcccattcctagacaggaaagcaaacttgctgcaagaagtgtaggggtcgggggtggg 636
Query: 437 agggggcttcgcatacttctgttttgctttggaggtggaaaggaaagcgtcagaaggcga 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agggggcttcgcatacttctgttttgctttggaggtggaaaggaaagcgtcagaaggcga 696
Query: 497 cccagggtgtggaagggcgtgggtcgtcccttgaacactcaaacagcaacgggggcagct 556
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 697 cccagggtgtggaagggcgtgggtcgtcccttgaacactcaaacagcaacgcgggcggct 756
Query: 557 aagtgtccgggaagcggtgaaattctgtgggaggaatttgaggaacttcccactgctgcg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aagtgtccgggaagcggtgaaattctgtgggaggaatttgaggaacttcccactgctgcg 816
Query: 617 ggagcttcaggggttaaaagagacgatgtcacatcggccgttccaagctcctccccgctc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggagcttcaggggttaaaagagacgatgtcacatcggccgttccaagctcctccccgctc 876
Query: 677 agtgaggtgaagatttttgaaaatcaccccattgcagactcctcccccgcctggaaacct 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 agtgaggtgaagatttttgaaaatcaccccattgcagactcctcccccgcctggaaacct 936
Query: 737 cgcccctagtactgggaatgactctgggcgtgcggcgtagtttgcagcc 785
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 cgcccctagtactgggaatgactctgggcgtgcggcgtagtttgcagcc 985
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1185
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1175
Effective search space: 910625
Effective search space used: 910625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_h04.g1 MSMg01no323_h04.g1 CHROMAT_FILE:
MSMg01no323_h04.g1 PHD_FILE: MSMg01no323_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:00 2005
(652 letters)
>mm_chr9_21560139_21561190
Length = 1052
Score = 1191 bits (616), Expect = 0.0
Identities = 641/652 (98%), Gaps = 6/652 (0%)
Strand = Plus / Minus
Query: 1 acccactggtgggagaacagctatatacgttgtcatctgagtccacagggacactgtggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 acccactggtgggagaacagctatatacgttgtcatctgagtccacagggacactgtggc 763
Query: 61 atgtttgcactcacacacacccagataaataaacataaaaagaaattagcctgataatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 762 atgtttgcactcacacacacccagataaataaacataaaaagaaattagcctgat-atca 704
Query: 121 tcccagcacttggaaagctgaggcaggaggagtcaccatagttcaaggttagcgactgga 180
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 703 tcccagcacttgggaagctgaggcaggaggagtcaccacagttcaaggttagcgactgga 644
Query: 181 cctgggaggaccgaaaacactttcctttcatctcgtcctcagtccaccacggccccacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cctgggaggaccgaaaacactttcctttcatctcgtcctcagtccaccacggccccacag 584
Query: 241 tggcccagcccatccacttggacagtgcacagctctcgccgaagttcatcagtgactacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tggcccagcccatccacttggacagtgcacagctctcgccgaagttcatcagtgactacc 524
Query: 301 tctggagcctggtggacaccacgtgggagccagagccttgacctcacaccttgcacagaa 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 523 tctggagcctggtggacaccacgtgggagccagagccttgacctcataccttgcacagaa 464
Query: 361 ctggggttgagggagccaaggaggggatcactctaaaattaaatgtctgtatgtgagtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctggggttgagggagccaaggaggggatcactctaaaattaaatgtctgtatgtgagtgc 404
Query: 421 gttcattgatttatctacttgctttgagacagtatctcatggagtccaggctggcctgca 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 gttcattgatttatctacttgctttgagacag-----catggagtccaggctggcctgca 349
Query: 481 gcttcttttttatttgtaattacatttactgtatgaatgttttgtctgcatgtgtgtctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcttcttttttatttgtaattacatttactgtatgaatgttttgtctgcatgtgtgtctg 289
Query: 541 ttagctgtgtattccaggagaggttagagagggcttcagaccccttgaaactggagttat 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 288 ttagctgtgtattccaggagaggttagagagggcttcagaccccctgaaactggagttat 229
Query: 601 gggtggttctgagctgccatgtggctattgggaatcgaacctgtattctata 652
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 228 gggtggttctgagctgccatgtggctactgggaatcgaacctgtattctata 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
