BAC Information

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BAC

Clone NameMSMg01-323I05
Chromosome9 (Build37)
Map Location 34,280,236 - 34,280,865
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323I05.T7 (MSMg01no323_i05.b1)MSMg01-323I05.TJ (MSMg01no323_i05.g1)
ACCAG441914AG441915
length1,2341,169
length of high quality
(start - end)
740 (128 - 867)629 (127 - 755)
definitionCHROMAT_FILE: MSMg01no323_i05.b1 PHD_FILE: MSMg01no323_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:08 2005CHROMAT_FILE: MSMg01no323_i05.g1 PHD_FILE: MSMg01no323_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACCAAGTGGNNNNCCCAATGCGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCAAAGAAGATCTCAGCCCTTTAAAAGATCTCCCATGG
NCATAGATTGGNAGGATTACCTTAAAAACAATGGCCATCTTCCTGAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTTTTCA
CTGAGTTAGAAAGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCT
TGGATAGCAAAAACAATTCTCAACAATAAAAGAAATTCTGGTGGAATCAC
CATCTCTGACCACAGGCTGAACTACAGACAATTGTGATTAAAAACTTCAT
GGTACTGGTACAGTGTCAGACAGGTAGATCAATGGAATAGAATTGAAGAC
TCAGAATTTAACCCACACACCTATGCTCACTTAATCTTTGACAAAGGAGC
TTTAGCTGGATGGTTTTAACCATCCAGTGGAAAAAAGACAGCATTTTCAA
CAAACGGTGCTGGCTCAGCTGGCAATTAGCATGTAGAAGAATGCATTCTT
TGCTCCTTGTACAAAGCTCAAGTTCAAGAGGATCAAGGACCTCCACATAA
ATCCATAAACACTGAAACTTATAGAGGAGAAAGTGGGGGAAAGCCTCTAA
TATATGGTCACAGGGGAAAAATTCCTGAACAGAACACCAATGGCTTGTGC
TGTAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCT
GTAAGGCAAAGGACAATGTCAATATGACAAACAGGCAACCAACAGATTAG
GAAAAAATCTTTACCAATCCTAAATCTGATAGAGGGCTAATATTCAATAT
ATATAANAACTTAAGTTAGACTCCAGAAAAACAAATACCCCTATTAAAAA
AATAGGGGGTAGAGAGCTAAACAAAGATTTCTCCACTGAGGAATAACAAA
TTTTTTTATAAGCAACTAAAAAAAATGCTCCAACATCCTTTAATCAACAG
GGAAAATGCAATCCAAACAAACCCTGAGAATCCATCTCCAACAACTTAAA
AGGGGTAAGTTCAAAAACTTAATTGGAAGCCAAAAGTTGTCCTGGAAAAG
GAAAAAAAAAAAAAATTTCCCCCTTTCTTTTTGGGAAATGCAAACATTGT
AAAACCCCCCTGCAAAACAAATTTGGGGTTCTCCCCAAAATGGGGCGTAT
TTTTATCCAAAGATTCCCAAATAACCCCCCTCGC
NCCTCCTTTTTTNNCCACACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGCATAAAAACACAAGGNCCCTTGCCT
TGGCTCTAGGGATACATTTAAACTTCTCCAGGGAGATGGNGAATGTCAGC
ATTTTTTTTTTAACAGACACACAGGAGGATGCACATTTTGATACATTATC
AGCCATATAAGCAAAGTAGAAAGGGATGATTGCAATTACAAGCACTTAAG
CATTCACTTTGGCATGCAGAGTTTTGAACTTTGTCCTGGATATAGCGACA
GACACAATGCGAACCTTGCTTTATTTCCTGAAGCTCATTGTTCAGAATGA
GTCAGGGATGGCGGGCGATTATAATACAAACTGGGATGAGATTAGTGATC
CGGTGGAGGCCAGTGCAACATGTGCTGGGAGAATAGCAAAGTTGGAAGCT
GATTCTGACTGTGAACATTAAAGAAAACAGACCAGAATTTCAGAAATAGA
GGGCAGGGATGATGAGGGTGATAGCTGAAAGTCACAGATGTGCTTGTAGG
TAGAGTGTGGGCGTGGCTGGGTCCTGTTAGAACAGGACTCAGAAAGTCAC
TTGAGGTTGGACCACAGGGTACCGAATAAAGTTCAAAGGCATATGGGACT
GAGGCAGCCTGTTCAATATTTTTTCCTTTGAGCTTATTGCCATTGTTTGG
AGAGGTGCACTCTAAAGGCCCATGTGTTGAAGTCTTAGGAGTGGGTGTCA
TTGAGAAAAGTCTTTTGGTTGTCAAGGCAGTGTCCTTGAAGACCATTATG
AGAACTTTTGGTTAGATCCCCTTTTCTTTCTGGCTCACGAAGTGAGGGGT
TTTGCTCTGTCATGTTCTCCTGGCATTTTGGGCTACTTTATTCCAAGCCT
TAAACAATGAGGACAGCTGACTACAGATTGTAACTGGCCCAAGTGGGAGT
TAAAAATCCTTTGTCCCTTTGAAAGAAAATGTTATCTGTTTTGTACAGAA
CAGAAACCTGAATAAAATATTAAAAAACCCCCCCTTTCCTTTCCAAAGGG
GGGTTTAAATTTATTTTAAAAATTTTTTAAAAAACACGAGCTTCCCCCGC
GTGGGGTTCCCGTCCACAAACACCGGGGGTTTTCCCCCCCCCGTGGGAGG
TACACCCATAAAAGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_i05.g1 MSMg01no323_i05.g1 CHROMAT_FILE:
MSMg01no323_i05.g1 PHD_FILE: MSMg01no323_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:09 2005
         (629 letters)



>mm_chr9_34280036_34281065
          Length = 1030

 Score = 1197 bits (619), Expect = 0.0
 Identities = 627/630 (99%), Gaps = 1/630 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagggagatggngaatgtcagca-ttttttttttaacagacacacaggaggatgcaca 59
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 830 tccagggagatggcgaatgtcagcatttttttttttaacagacacacaggaggatgcaca 771

                                                                       
Query: 60  ttttgatacattatcagccatataagcaaagtagaaagggatgattgcaattacaagcac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttttgatacattatcagccatataagcaaagtagaaagggatgattgcaattacaagcac 711

                                                                       
Query: 120 ttaagcattcactttggcatgcagagttttgaactttgtcctggatatagcgacagacac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttaagcattcactttggcatgcagagttttgaactttgtcctggatatagcgacagacac 651

                                                                       
Query: 180 aatgcgaaccttgctttatttcctgaagctcattgttcagaatgagtcagggatggcggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aatgcgaaccttgctttatttcctgaagctcattgttcagaatgagtcagggatggcggg 591

                                                                       
Query: 240 cgattataatacaaactgggatgagattagtgatccggtggaggccagtgcaacatgtgc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cgattataatacaaactgggatgagattagtgatccggtggaggccagtgcaacatgtgc 531

                                                                       
Query: 300 tgggagaatagcaaagttggaagctgattctgactgtgaacattaaagaaaacagaccag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgggagaatagcaaagttggaagctgattctgactgtgaacattaaagaaaacagaccag 471

                                                                       
Query: 360 aatttcagaaatagagggcagggatgatgagggtgatagctgaaagtcacagatgtgctt 419
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aatttcagaaatagagggcagagatgatgagggtgatagctgaaagtcacagatgtgctt 411

                                                                       
Query: 420 gtaggtagagtgtgggcgtggctgggtcctgttagaacaggactcagaaagtcacttgag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtaggtagagtgtgggcgtggctgggtcctgttagaacaggactcagaaagtcacttgag 351

                                                                       
Query: 480 gttggaccacagggtaccgaataaagttcaaaggcatatgggactgaggcagcctgttca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gttggaccacagggtaccgaataaagttcaaaggcatatgggactgaggcagcctgttca 291

                                                                       
Query: 540 atattttttcctttgagcttattgccattgtttggagaggtgcactctaaaggcccatgt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atattttttcctttgagcttattgccattgtttggagaggtgcactctaaaggcccatgt 231

                                         
Query: 600 gttgaagtcttaggagtgggtgtcattgag 629
           ||||||||||||||||||||||||||||||
Sbjct: 230 gttgaagtcttaggagtgggtgtcattgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)