BAC Information

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BAC

Clone NameMSMg01-323P05
Chromosome9 (Build37)
Map Location 36,573,119 - 36,573,555
singlet/doubletsinglet
Overlap geneStt3a
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1
Downstream geneEi24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323P05.T7 (MSMg01no323_p05.b1)MSMg01-323P05.TJ (MSMg01no323_p05.g1)
ACCAG442227AG442228
length1,2581,245
length of high quality
(start - end)		654 (88 - 741)667 (135 - 801)
definitionCHROMAT_FILE: MSMg01no323_p05.b1 PHD_FILE: MSMg01no323_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:05 2005CHROMAT_FILE: MSMg01no323_p05.g1 PHD_FILE: MSMg01no323_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTTCNNNNNNNGTCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCCTCTTTGACATTTGTTGCCTTTAAGATTGACTGCAGTCAT
TTTGACAATGGTGAAGCGCTATCTCAAAGTAGTTTCATCTTGCATTTTCC
GGATTGACGAGAATATTGAATACTTTTTTCTTGTATTGAAAATAGATTTT
TTTAGATGATATATTTTGATTATGGCTTCCCCTCCTATGTTGAAATAAAT
GTTACTAAAATCCCACAGTAGATTCACTACCCACACCAATGGTCTATTTT
TCCAAGTGAAAGACACACACTCACCCTATATATTTTAATATGTCTTAAAC
AGCACAATAGCTGAGCCACTACATAACTTCCATGTAGTTAAACCCTACTT
ACTACTTACTAATTCTATATTCTATCTTGGCTACTCTGGGCCCAGTTGGG
CAGCCCTCTGGGACATGCTATCCCAGCTCTTACACATGGGCATTATGCCT
CTCTGTCCTGAACTCTACTCAGGCATGGCATCTCTCCTCTCCTCCACATT
CTCCCAGCATAGCTGCTCTCCCTTCTCTTTTCTCTGGTCCTGGACCCAAG
CCCAGAAAATCCTAAACTATCCTTTTCAGATATTGACTGCTGGCATCTTT
ATTTATCAATCAGAAGCAACTGGGAGAAAATTCCCAGAAGATGTGCAGGC
ACTTGTGTGGGCAGTTTTTTGGAGAACATAATTAGCATTAGNAANACAAG
CNGCTACACTCCTGCTACNNNCCCCCTACCAGGATTCAGAGTCTTTCTGA
ATCCTTCAGAAAATAAACAGGCATCTAAGAAAGAATAAAATTGAAAACAA
ATCAAAAACAAGTCCGGATATGACATAGCAACCCAACCAGAAAAAAAAGT
AGGAAAAATCCAACGAACCCCTATAGACCACCCAGGGCCATATTTTTGCA
GAACAGGATTTCCTTTTAAAAACCACACTTACAAAACAAAACTGGAACCA
TAAGGGGAAAGAATTTTTTTGAAATTTTTAAATAATTTCCTTATTTCCAT
TAAATTTTATCCCCCTTTCTAATTTCCCCCCAAAAAAATCCCCTAAACCC
CCCCCCCTCCCCCGTGAATTTAACCGGTCCCCTCCAATTTTTGGGGCCAA
AATTTTCCCCTAAATGGGGGGTAAAAACCTCTCTAAAACAAAAGGCCCTC
CTTCTTCCTTGGGGAAGGAATAAGGCCCCCCCCCCCTTATTTATACCATA
ACACCCCT

NCGTTTTTNNNNNNAATCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAGGACCGTGATCCTCTTCC
TCAGTATCACCAAGTGCCGTTAATCTAGCCCCGGGCTAGTGTACCTGGCT
TGTACGCTCTCCTCTCATGCCCACTTAGGTTTCCGTGATTATTTTCTTTT
TCCCCTTTAACAAGTACCTTTGTTTGGTTTTCCCTCTTTCTATTTTCACG
TCCTTTTCTACTTTCCTTTCTCCTCCACTTCTGTTTCTTTCTGATCCTTG
TGTCTTACTTTTGCTAGTTGTACTTGGTTGCTGTGCAACTAGGAAACAGA
ATTGTGGGTGGAATATATATTTCTTTTTGTAGTACTGAAAGATGGAAACC
AGGGCTTTTTTATCTTCTAGGCAAATACTCTATTGTTGAATTACATGGGC
AGCCCTTTTAAATAATTTTATCTTGGGACAGGCTCTCTCTAAACTGGAGC
CTTTGATTCTTCTGTCCCAGTCTCTTAAATACCTGGGATTATAGACGTGT
GGAGTGTGTGTTTTGAATACTCTTTTTTTGTTCTTTTATTTTTGGCAGAG
AAGGCAATATAACTAGGTTACTGGTAACTCTGATTGGCCTAGAATGTGCT
TTGTAGATCAGATTGGCCTGCCTCTACCTTCTAAGTATTGGGATTAAAGG
CATGTGCCACTAAGCATGGCTCTCCCTTTTTCAATTTGACATATAAACCT
CATAATGTTTGCTTCTTCCCTGTACATCAGTCTGTAGTCCCAGGTTGGGT
TACCTCTGTGGTGTTTTTTGTAGCTCACGTATATCTATGGTTCTTAACCA
TCATAAAAGATTTAAGCTAATTTAAGTAATTTAGTATATTTCGTATCTTA
CAGTCTTGACTTTTTCCATTTTAAGAATTGAATATCATTCGTTGCTACCC
CTTGATGTCCAGAAGACTAAGCTTGGATTTTTGCAATGGTCCCTTTGAAA
ACAGGAACACCCTTCTGAACCTTCTCTCCCGTCCAAGCGCTGCGGGGTTA
TTGAACTCTGGGACCCTTTCCCCTCCTGAACTGGCTTGTGGAAAACTTTC
ACACCTTCTTTTAAAACAGGTCTTTATCTCTTTAAAAAAGCCCGCCCCCT
TTTTTTTTTAACTATTTTATTTTTCCCTCCCCTTCAGAAAGTGTTGGCCT
TCTCTCGCCACACCATCATAACACCTTCTCTCCTCTTAATAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_p05.g1 MSMg01no323_p05.g1 CHROMAT_FILE:
MSMg01no323_p05.g1 PHD_FILE: MSMg01no323_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:05 2005
         (667 letters)



>mm_chr9_36573119_36574185
          Length = 1067

 Score =  791 bits (409), Expect = 0.0
 Identities = 430/437 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctagtgtacctggcttgtacgctctcctctcatgcccacttaggtttccgtgattattt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 437 gctagtgtacctggcttgtacgctctcctctcatgcccacttatgtttccgtgattattt 378

                                                                       
Query: 61  tctttttcccctttaacaagtacctttgtttggttttccctctttctattttcacgtcct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctttttcccttttaacaagtacctttgtttggttttccctctttctattttcacgtcct 318

                                                                       
Query: 121 tttctactttcctttctcctccacttctgtttctttctgatccttgtgtcttacttttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttctactttcctttctcctccacttctgtttctttctgatccttgtgtcttacttttgc 258

                                                                       
Query: 181 tagttgtacttggttgctgtgcaactaggaaacagaattgtgggtggaatatatatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tagttgtacttggttgctgtgcaactaggaaacagaattgtgggtggaatatatatttct 198

                                                                       
Query: 241 ttttgtagtactgaaagatggaaaccagggcttttttatcttctaggcaaatactctatt 300
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||  ||
Sbjct: 197 ttttgtagtactgaaagatggaaaccagggcttttttgccttctaggcaaatactccgtt 138

                                                                       
Query: 301 gttgaattacatgggcagcccttttaaataattttatcttgggacaggctctctctaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gttgaattacatgggcagcccttttaaataattttatcttgggacaggctctctctaaac 78

                                                                       
Query: 361 tggagcctttgattcttctgtcccagtctcttaaatacctgggattatagacgtgtggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tggagcctttgattcttctgtcccagtctcttaaatacctgggattatagacgtgtggag 18

                            
Query: 421 tgtgtgttttgaatact 437
           |||||||||||| ||||
Sbjct: 17  tgtgtgttttgagtact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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