Query= MSMg01no323_p09.b1 MSMg01no323_p09.b1 CHROMAT_FILE:
MSMg01no323_p09.b1 PHD_FILE: MSMg01no323_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:07 2005
(614 letters)
>mm_chr9_33532691_33533704
Length = 1014
Score = 830 bits (429), Expect = 0.0
Identities = 450/457 (98%), Gaps = 1/457 (0%)
Strand = Plus / Plus
Query: 1 atgaacttattaaagatttgcttctaggtcagtgtcctggggcagagaccaaggtgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaacttattaaagatttgcttctaggtcagtgtcctggggcagagaccaaggtgagga 260
Query: 61 caggtgcacagcatatggaatgcatctggtacaagcaatctactgcctttctgtttctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtgcacagcatatggaatgcatctggtacaagcaatctactgcctttctgtttctac 320
Query: 121 cccagaagtagcttccactttttctccttgcattggggttaatattcaatttaatttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagaagtagcttccactttttctccttgcattggggttaatattcaatttaatttcct 380
Query: 181 tagaatattatctatggagttttcctccacgattaagccaagtattcatttccacataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatattatctatggagttttcctccacgattaagccaagtattcatttccacataaa 440
Query: 241 aaaaaccctcctggtttagttaataaattgtgtatgtaccctactttattctaattattt 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aaaaaccctcctggtttagttaataaattgtgtatgtaccctactttagcctaattattt 500
Query: 301 acattttggaatctacattattagatatagggtcaccctttaaagacagtgattagtctc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 acattttggaatctacattattagatatagggtcaccctttaaagatagtgattagtctc 560
Query: 361 tctatatagtatatgtgcctaaaaatccatgagagctgcctgcatggctcacagaatgta 420
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 561 tctatatagtatatgtgcctaaaaatccatgagagctgcctgtatggctcacagaacgtg 620
Query: 421 agaataccctcatttcagtcaccaagcctgacatttt 457
|||||||||||||||||||||||||||||||| ||||
Sbjct: 621 agaataccctcatttcagtcaccaagcctgac-tttt 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_p09.g1 MSMg01no323_p09.g1 CHROMAT_FILE:
MSMg01no323_p09.g1 PHD_FILE: MSMg01no323_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:07 2005
(677 letters)
>mm_chr9_33681070_33682146
Length = 1077
Score = 1284 bits (664), Expect = 0.0
Identities = 673/676 (99%)
Strand = Plus / Minus
Query: 1 aaagagtgaggcctaaaaagaagacagattaaagtctcatgagacagccaagtttattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 aaagagtgaggcctaaaaagaagacagattaaagtctcatgagacagccaagtttattta 817
Query: 61 gagcatcaaacaatttatactctgagggtgaagaagcacacaattaaagtgggcaatcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gagcatcaaacaatttatactctgagggtgaagaagcacacaattaaagtgggcaatcta 757
Query: 121 aaggacaagttgtacatggcaaaatcatgcttttgcatagaggcatatgaataacaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaggacaagttgtacatggcaaaatcatgcttttgcatagaggcatatgaataacaacag 697
Query: 181 ctgaagtaaactcactcttatccactatatctgggagaatcatgaaaacacattccaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctgaagtaaactcactcttatccactatatctgggagaatcatgaaaacacattccaaaa 637
Query: 241 aatacccatgttatagaggaacagagattgcaaaactcttgtttacttgtttacttggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatacccatgttatagaggaacagagattgcaaaactcttgtttacttgtttacttggat 577
Query: 301 atttatcacaaggtctcagttatctcctcccacagcttcattcatggaccatgtcaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atttatcacaaggtctcagttatctcctcccacagcttcattcatggaccatgtcaaaat 517
Query: 361 aagcaaaactgtccaagggaagagataggacaaatatgaggaaggaggcgaggtgagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagcaaaactgtccaagggaagagataggacaaatatgaggaaggaggcgaggtgagact 457
Query: 421 agaaggtatgaatttaaaagtacactgcattttacctctatacacacaataaattctacg 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 456 agaaggtatgaatttaaaagtacactgcattttacctctatacaaacaataaattctacg 397
Query: 481 tttcttttgtataaaatatcacactttaccttaaggtatatcaccagtcacctatagcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttcttttgtataaaatatcacactttaccttaaggtatatcaccagtcacctatagcat 337
Query: 541 gtcctgttagcagatgaccatggggaaaattgtcctcgaatacaaattcagttgtgagct 600
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 336 gtcctgttagcaggtgaccatggggaaaattgtcctcgaatacaaactcagttgtgagct 277
Query: 601 tctgtacttatttcttggagtttgttatttattagtaagaacacaaattgcctgagggat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctgtacttatttcttggagtttgttatttattagtaagaacacaaattgcctgagggat 217
Query: 661 gaatgtggataatgtc 676
||||||||||||||||
Sbjct: 216 gaatgtggataatgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
