BAC Information

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BAC

Clone NameMSMg01-324D05
Chromosome9 (Build37)
Map Location 77,962,805 - 77,963,077
singlet/doubletsinglet
Overlap geneIck
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9
Downstream geneC920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324D05.T7 (MSMg01no324_d05.b1)MSMg01-324D05.TJ (MSMg01no324_d05.g1)
ACCAG442418AG442419
length840773
length of high quality
(start - end)
277 (74 - 350)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no324_d05.b1 PHD_FILE: MSMg01no324_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:27 2005CHROMAT_FILE: MSMg01no324_d05.g1 PHD_FILE: MSMg01no324_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCCGATCCGCGGA
ATTCTCTTCAGCCATTTCACCTCCACCAGTGAGTCACCAAGACCTTTGAA
GTGTGTTTCATATAGTCTCTTCCTTCTGCATCTAATCTAGATCTTGCCCT
TCCCTTCCTGCAGCCTGAAACATTGTGGAGCCACCTTGTCGCCGGCCCCC
CAGGCCTGTTAGTGAGCCCTCTCGAGTGTTTGCCCTCTCTGTCCTCTTCC
TCTGCTTCCCGGCTAAGTCTTTCACATGGTCACTTTTTGTTATATCTCCT
GGCCATGCGACCTTTAGTTTATCCATTGTGTCAGTTCTTCACTAATCCAN
CCTGATTTTTCAAGTCCCATTCATAAATGAACCCTCAGCCCTTCTAAAAT
TTCTCCTGGCACTTCCAAGGGTCCCTAAAGGGTGGGGGGGCCAAAAATCC
TTTTTCCCCCCAAAAAGGGGAAAATAAAAACTCTTAAACCCCCCTCTATT
TAAAAAACCCCCCCCCTTTTTTAATACCCCCCCTCTAAAAATTATAAATA
ATAAGAACTGAATTATATAAATAGAGAGCCATATAAGTCCGTATAAGTAA
AAAATGTGTACGGAATCGATCCTATATTTTATCATGCACCTCTATGACTT
GTGTGAGTTTGTGGTTTCATTATGTTTTCACTCATAGATATATTTTGTTA
TATCTATATGATCTGTGCTGCTAGAATATGTTTTTCTGTTCTAGTTCTAA
ATGCATTGTTAAGTTTCGGAAGATAGAATACGGTTATGATGCCTTGACTA
GTAGATGATCGTAAGGGTCATCATAATATCATAAAGAAAA
CGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGGAAGCTATTTGTCTCAGTTTGTG
TTGAAATCCCACAATTATTAAGTTGGTCTTAATAACAGTGAAGGGATGCC
ACAGCAACAGAGCAGGTGAACTTGCCAACATGAGTGAGGTAAAGCAGGCA
AAGAAGCAAAGTTTCCTTCTTCAGTGTCCTTTTGTCCAGGCTGATACCAA
CAGGTGTCACCTACATCTAGGGTGGGCCTTCCCTCACAGAATCTTATTAA
GAAGGGGCTGGAGAGATGGCTTTCCTGTTAAGATCGAGGGATACTTTCAC
AAAGGATGCAGATTTGATTCCCAGCACCCATGTCGGCTCACAATCTGTGG
GTCCAGTTCCAAGGGATCCGACACCCTATTCTGGCCTCTATAGGTACCAG
ACACACACATGAAAGGCACACATATGAATGCAGAACACTCACACATGTAC
AAGTAAATATTAAGAAGAGAAGAGAAAGCCCCTGACAGAGTGCCCAGCAG
TTGTGTTTTAGTTGACCCCAGGTGCAGCCAAGCTGACAGCCAAGACTAAG
CATGGAGGCCACCTGTGAGGAGGGAGGGGCTCCCTACTCAGGGAGCTGAG
GAATTTTCAAGGGCTCCTCAGTTTCTCAAGGGGTCTTGGGTTTGGTTTGT
TCAATCTGCTATTGCTGGGAAAGAAGGGTCCCAAGGTGGTCTCTGAATGC
CATTCCAAAAAAAAAGCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_d05.b1 MSMg01no324_d05.b1 CHROMAT_FILE:
MSMg01no324_d05.b1 PHD_FILE: MSMg01no324_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:27 2005
         (277 letters)



>mm_chr9_77962602_77963278
          Length = 677

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   cagtgagtcaccaagacctttgaagtgtgtttcatatagtctcttccttctgcatctaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cagtgagtcaccaagacctttgaagtgtgtttcatatagtctcttccttctgcatctaat 263

                                                                       
Query: 64  ctagatcttgcccttcccttcctgcagcctgaaacattgtggagccaccttgtcgccggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagatcttgcccttcccttcctgcagcctgaaacattgtggagccaccttgtcgccggc 323

                                                                       
Query: 124 cccccaggcctgttagtgagccctctcgagtgtttgccctctctgtcctcttcctctgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccccaggcctgttagtgagccctctcgagtgtttgccctctctgtcctcttcctctgct 383

                                                                       
Query: 184 tcccggctaagtctttcacatggtcactttttgttatatctcctggccatgcgaccttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcccggctaagtctttcacatggtcactttttgttatatctcctggccatgcgaccttta 443

                                            
Query: 244 gtttatccattgtgtcagttcttcactaatcca 276
           |||||||||||||||||||||||||||||||||
Sbjct: 444 gtttatccattgtgtcagttcttcactaatcca 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)