BAC Information

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BAC

Clone NameMSMg01-324D11
Chromosome9 (Build37)
Map Location 98,562,821 - 98,563,286
singlet/doubletsinglet
Overlap genenone
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22
Downstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324D11.T7 (MSMg01no324_d11.b1)MSMg01-324D11.TJ (MSMg01no324_d11.g1)
ACCAG442429AG442430
length749785
length of high quality
(start - end)
486 (47 - 532)466 (73 - 538)
definitionCHROMAT_FILE: MSMg01no324_d11.b1 PHD_FILE: MSMg01no324_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:28 2005CHROMAT_FILE: MSMg01no324_d11.g1 PHD_FILE: MSMg01no324_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAAT
TCTGTGAGCTTCCCTTGATGGTTGGACTGTAAAGTACAAGATGAAATAAA
CCCTTTCTTCCCGAAGCTGGTTTTAGCCAGTGTTTTATCACAACAGCCAA
AAGCAAAGCAGCACTGTGTGTTTAAAGGCTCAGTGTATGGGCCCTGCTGT
CTGTTCTGTTGATCTGCCTGCTGTTTCTCTGATACCCCCCCTCCCCCCAG
CTCCATTAATGCAGTAGTACAATAAGGCTGAAAGCTGACATGTCAGACCT
TCAACTGTGATCTGCCTTCCGATTGTGATGGCGATTCTAGGTCTTTTGCC
TCCCCGTATACATCTTCAGATCTACTTGTTAGTATCCACACAATGCGCTG
AGGTCTTCACTTGGATTTTGCTGATTCTATAGGTCAAAGAGGAAAGAGCT
CACATCGTGAGAGTGTTTGCTCACATCTTCTCAAACACAGGACAGCCAGG
GCTATACAGAGAAACCATGTCCCTAAAAACCTAGGATATTAACAAACAAA
AAAGAAAGTAAGAAAGAATGAAAGACAGAGAAAAAGCACAAGAAACACAG
ATACCAAGGTACACTTTCACATCCATAAAAAACTTACTCCAACTATATAG
AAAACCCTATTTTATAAGCAAAAGACCTATAAAGCAAATAAAAAAAAAAA
AAATAAAACCACTACGGGCCTGAACAAAAACTGAAAAATACACCCCTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACCCATATTCCCTCTTGGACTTCAATG
GCCAAATACAGTCCCAATGACCTTGCCATCTCAGATGCTAAGAAACATGG
CCATTTGTCCACTGGTCCAACTGGGAAAGAGGGGAGTGGATATTGAAGGC
AAAGAGAAACTGAGATCCAGGAAAGTCAGCTTTCCTAGAGAGTTATTCAG
GAGCTCACTACAGAAGTGGCACAAGGTTTTGGAAATAGAGCCTTTTCTCT
GTCCCCAGTAGACTACTCCACATCCTATGGTGATCATCCATGGTCAGTGC
CCAGGGCAGCATTGGGTAGGAGGGAATCACGTGGTCTCCATGGAGACTTG
CTGTGTACACCAGGCGCTGGACCGTCCCTTTGTCCCTTTGTCCCCCTCTT
CTCCTGTCACCAGCTCAGCCATGGAAGCTGATGCTTATAGAGGTCACATG
GCTGGCTGGTGGTGTCCCTAGATCATTAGTCTCCTAGTTCTGCAGAAACT
AAGTCCTCACCACTGAAAGCAAGACTGTAAATTTCCCAAGATGCTTTCAT
GAAGGCAGAGGATATTCTTAAATAAACAGTGAGCCTGAAACCCTGCCCTT
TGTCCCCCTAGAGGCCAGCCCCCGTACCCCTACTCCCTAATGTTTACTTC
CTCTCCATTTCTTGCCTATATATGGTTTTACATTAAACAACGGGTGTCTG
ACAGCAACTCCAAAATTCAACAGTTTCTCACCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_d11.g1 MSMg01no324_d11.g1 CHROMAT_FILE:
MSMg01no324_d11.g1 PHD_FILE: MSMg01no324_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:28 2005
         (466 letters)



>mm_chr9_98562621_98563486
          Length = 866

 Score =  870 bits (450), Expect = 0.0
 Identities = 462/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccatattccctcttggacttcaatggccaaatacagtcccaatgaccttgccatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccatattccctcttggacttcaatggccaaatacagtcccaatgaccttgccatctc 260

                                                                       
Query: 61  agatgctaagaaacatggccatttgtccactggtccaactgggaaagaggggagtggata 120
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 261 agatgctaagaaacatggccatttgtccactagtccaactgggaaagaagggagtggata 320

                                                                       
Query: 121 ttgaaggcaaagagaaactgagatccaggaaagtcagctttcctagagagttattcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaaggcaaagagaaactgagatccaggaaagtcagctttcctagagagttattcagga 380

                                                                       
Query: 181 gctcactacagaagtggcacaaggttttggaaatagagccttttctctgtccccagtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcactacagaagtggcacaaggttttggaaatagagccttttctctgtccccagtaga 440

                                                                       
Query: 241 ctactccacatcctatggtgatcatccatggtcagtgcccagggcagcattgggtaggag 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactccacatccaatggtgatcatccatggtcagtgcccagggcagcattgggtaggag 500

                                                                       
Query: 301 ggaatcacgtggtctccatggagacttgctgtgtacaccaggcgctggaccgtccctttg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ggaatcacgtggtctccatggagacttgctgtgtacaccaggcgctggacagtccctttg 560

                                                                       
Query: 361 tccctttgtccccctcttctcctgtcaccagctcagccatggaagctgatgcttatagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctttgtccccctcttctcctgtcaccagctcagccatggaagctgatgcttatagag 620

                                                         
Query: 421 gtcacatggctggctggtggtgtccctagatcattagtctcctagt 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcacatggctggctggtggtgtccctagatcattagtctcctagt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)