Query= MSMg01no324_f16.b1 MSMg01no324_f16.b1 CHROMAT_FILE:
MSMg01no324_f16.b1 PHD_FILE: MSMg01no324_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:39 2005
(257 letters)
>mm_chr9_9942657_9943313
Length = 657
Score = 369 bits (191), Expect = e-107
Identities = 229/247 (92%), Gaps = 13/247 (5%)
Strand = Plus / Minus
Query: 5 gaattctctggaatacaccaggttgtcagtaaatacagagtttgaaattatgaggtgagt 64
||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 413 gaattctctggaatacaagaggttg--------tacagagtttgaaattatgaggtgagt 362
Query: 65 tggtgatctaaaatcttgttgtgtttcttcttgtacaaagttttctactttattttgttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtgatctaaaatcttgttgtgtttcttcttgtacaaagttttctactttattttgttg 302
Query: 125 aacataactaaattgtcaaactaaatattctcacatattactttttaaaaacaataaaca 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 aacataactaaattgtcaaactaaatattctcacagattactttttaaaaacaataaaca 242
Query: 185 aatgcgaagaggaggagagagaagaggaagagaggagagga-gag--gagaggagaggag 241
|||| ||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||
Sbjct: 241 aatgagaagaggaggagagagaagagga-gagagaagaggaagagaagagaggagaggag 183
Query: 242 ag-gaga 247
|| ||||
Sbjct: 182 agagaga 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no324_f16.g1 MSMg01no324_f16.g1 CHROMAT_FILE:
MSMg01no324_f16.g1 PHD_FILE: MSMg01no324_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:39 2005
(675 letters)
>mm_chr9_9754291_9755366
Length = 1076
Score = 1268 bits (656), Expect = 0.0
Identities = 671/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 1 attaacatattaatgtatcaactgtctgtttctaaagtttgttcctaatgtccctgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaacatattaatgtatcaactgtctgtttctaaagtttgttcctaatgtccctgtttt 260
Query: 61 tcttgttttattttttaaaccaaattacgcagtaaacattgtttttctgaaagtcttttg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tcttgttttattttttaaaccaaattacacagtaaacattgtttttctgaaagtcttttg 320
Query: 121 cagctaatttacagaaaaccatctttgaaaatagattattgaaagacaaatgcctcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctaatttacagaaaaccatctttgaaaatagattattgaaagacaaatgcctcagtg 380
Query: 181 cgtttgtaagagaggctggtgtctgcataggagatgggcaccactcatttgtaggaatct 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtttgtaagaggggctggtgtctgcataggagatgggcaccactcatttgtaggaatct 440
Query: 241 caggacattctacaagaagccatgagaacagatgtacagtaatcagagcccccccccccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggacattctacaagaagccatgagaacagatgtacagtaatcagagcccccccccccc 500
Query: 301 -atgtggggagggatgctactggtaggctgcatgggtacactaaaatcaatactttgttg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgtggggagggatgctactggtaggctgcatgggtacactaaaatcaatactttgttg 560
Query: 360 atgaataggaagactaacaagaatactttcttggaaaagtgactgcttatagtcaaagcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaataggaagactaacaagaatactttcttggaaaagtgactgcttatagtcaaagcc 620
Query: 420 atggtcttttttatgtctctcttagcgatagagaagcagaaaccatgtgattattggctc 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 atggtcttttttatgtctctcttagcgatggagaagcagaaaccatgtgattattggctc 680
Query: 480 agtgttccctcatcaaggcccctgagaactgcaatgatgtgagtacaccctcactcctat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgttccctcatcaaggcccctgagaactgcaatgatgtgagtacaccctcactcctat 740
Query: 540 tgctcacttgcaaagtttcctttcttttctttctgtttatttttaatttcaattgagttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctcacttgcaaagtttcctttcttttctttctgtttatttttaatttcaattgagttg 800
Query: 600 atgttatacaatgtgttctgatcattgttcagacactgtggcagctttcacagaacctgc 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 attttatacaatgtgttctgatcattgttcagacactgtggcagctttcacagaacctgc 860
Query: 660 atatgttcaagtcatc 675
||||||||||||||||
Sbjct: 861 atatgttcaagtcatc 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
