Query= MSMg01no324_g04.b1 MSMg01no324_g04.b1 CHROMAT_FILE:
MSMg01no324_g04.b1 PHD_FILE: MSMg01no324_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:41 2005
(697 letters)
>mm_chr9_103357776_103358872
Length = 1097
Score = 1083 bits (560), Expect = 0.0
Identities = 656/694 (94%), Gaps = 15/694 (2%)
Strand = Plus / Plus
Query: 5 gaattcattccgtgtcctaggaagaccttggcattgccggtgccctgccctgggatcccg 64
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccgtgtcctaggaagaccttgacattgccggtgccctgccctgggatccca 264
Query: 65 agtagctgggactacaggtctgtgccccaggctgccagtcttgaccttctgtgagacagg 124
||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||||||
Sbjct: 265 agtagctgggactacaggtctgtgccccaggctgccattcttgactttttgtaagacagg 324
Query: 125 gtctcagtatgcagtccagactggcctgaaactcactatgtagaccaggctggcccagaa 184
||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 325 gtctcagtacgcagtccagactggcctggaactcactatgtagaccaggctggcctggaa 384
Query: 185 ctttctgcaatcctcccatctctgcctgagtgctgggattacaggcatgcaccaccgtgt 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttctgcaatcctcccacctctgcctgagtgctgggattacaggcatgcaccaccgtgt 444
Query: 245 ccaggctggctgacattcttaaatatttgatgcatgcatgcatgaataaatgaaccatgt 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaggctggctgacactcttaaatatttgatgcatgcatgcatgaataaatgaaccatgt 504
Query: 305 ggccatggtaatagttcttagccattccctggctctggtctggaggttgtttccaataag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggccatggtaatagttcttagccattccctggctctggtctggaggttgtttccaataag 564
Query: 365 ccattaacaaaggagtttgtaagtgttcctgggattttttgtg-tgtgtgtaggttctga 423
||||||| |||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 565 ccattaagaaaggagtttgtaagtgttcctgggatttttt-tcatgtg----ggctctga 619
Query: 424 ggttcaaggtcatgtggtcagggttgggtggcaagcgttttttatgtactgagccatcta 483
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 620 ggttcaaggtcatgtggtcagacttgggtggcaagcattttttatgtactgagccatcta 679
Query: 484 gcaggtgtctgtcttgtcttatttctgtcttgagactaggtctcactatgttgcccagga 543
||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcaggc--c---ctt----tatttctgtcttgagactaggtctcactatgttgcccaggc 730
Query: 544 ttgccttgaactcactgcacaggtcaaacaggccttaaatgtttcattttccttattcag 603
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 731 ttgccttgaactcactgcgcaggtcaaacaggccttaaatgtttcgttttccttattcag 790
Query: 604 ggtttctcatgtttgaatatggagtctagataattgacaatcaaaattcttaaaataagc 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgtttctcatgtttgaatatggagtctagataattgacaatcaaaattcttaaaataagc 850
Query: 664 tctttgaaatttttatataataaagcttatttaa 697
||||||||||||||||||||||||||||||||||
Sbjct: 851 tctttgaaatttttatataataaagcttatttaa 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_g04.g1 MSMg01no324_g04.g1 CHROMAT_FILE:
MSMg01no324_g04.g1 PHD_FILE: MSMg01no324_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:42 2005
(250 letters)
>mm_chr9_103531648_103532297
Length = 650
Score = 431 bits (223), Expect = e-125
Identities = 243/250 (97%)
Strand = Plus / Minus
Query: 1 aattcactctatagactaagttggcctcatactcagagcagccctcctgtgtgtccactc 60
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 545 aattcactctatagactaagttggcctcaaactcggagcagccctcctgtgtgtccactc 486
Query: 61 ttcaaatactaggattacagatgtgtaatacctaactggtatgtttcttaacaggaattt 120
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 485 ttcaaatactaggattacagatgtgtaatacctagctggtatgtttcttagcaggaattt 426
Query: 121 cttcangaattaatggtgcttcaggaatctcttccatgatacttgcagtatgggatgagt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cttcaggaattaatggtgcttcaggaatctcttccatgatacttgcagtatgggatgagt 366
Query: 181 cagtggaaggcctcagaactgtcagctaaaaggagaaaggatcgcagttacaagatgaga 240
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 365 cagtggaaggcctcagaactgtcagctaagaggagaaaggatcacagttacaagatgaga 306
Query: 241 ccgagcttta 250
||||||||||
Sbjct: 305 ccgagcttta 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
