Query= MSMg01no324_h18.b1 MSMg01no324_h18.b1 CHROMAT_FILE:
MSMg01no324_h18.b1 PHD_FILE: MSMg01no324_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:49 2005
(612 letters)
>mm_chr9_43761543_43762555
Length = 1013
Score = 1127 bits (583), Expect = 0.0
Identities = 604/611 (98%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 3 ggaattcatccagttgccccagctctcatttctattaaaactccatttgccaagaaagtg 62
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcatccagttgccagagctctcatttctattaaaactccatttgccaagaaagtg 262
Query: 63 gaaaggtaattacgagccctagccttaaatcactccgctgctgaattattaaaggggaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaaggtaattacgagccctagccttaaatcactccgctgctgaattattaaaggggaga 322
Query: 123 attaaaaataatcaggctttttt-cattacacttcatagcagggaaattaaaggtgtaag 181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 attaaaaataatcaggctttttttcattacacttcatagcagggaaattaaaggtgtaag 382
Query: 182 aatgtattttttgcctcaaatttaagtattcattttggagatttataggggagttgaagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatgtattttttgcctcaaatttaagtattcattttggagatttataggggagttgaagt 442
Query: 242 gattccctgcatgcctgcctcatctctctataaaagggtgagagagaaaaacccttgtaa 301
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 gattccctgcatgcctgcctcatctctctataaaagggggagagagaaaaacccttgtaa 502
Query: 302 aattaaaagggagatagagcgaagaaggggtttaacataaagaagtacaatggagtgttt 361
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aattaaaagggagatagagtgaagaaggggtttaacataaagaagtacaatggagtgttt 562
Query: 362 tgcattttaatacacctttttctgcacaattacaccactgagtgatatggcagaaagaga 421
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcattttaatacatttttttctgcacaattacaccactgagtgatatggcagaaagaga 622
Query: 422 ttagggcctccagtctcaggcactgaatggtgaggtggtaaggggggctctcacccatta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttagggcctccagtctcaggcactgaatggtgaggtggtaaggggggctctcacccatta 682
Query: 482 ttgagtaagaaggacagaaagatggtcagggctggccctgggtcccaaagccctggggag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgagtaagaaggacagaaagatggtcagggctggccctgggtcccaaagccctggggag 742
Query: 542 caagcaccgtctgggctgcctggctacctacaccagcagaatgagtcaccagatctcttc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caagcaccgtctgggctgcctggctacctacaccagcagaatgagtcaccagatctcttc 802
Query: 602 atagaaaaaca 612
|||||||||||
Sbjct: 803 atagaaaaaca 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_h18.g1 MSMg01no324_h18.g1 CHROMAT_FILE:
MSMg01no324_h18.g1 PHD_FILE: MSMg01no324_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:49 2005
(608 letters)
>mm_chr9_43916589_43917595
Length = 1007
Score = 864 bits (447), Expect = 0.0
Identities = 462/469 (98%), Gaps = 5/469 (1%)
Strand = Plus / Minus
Query: 142 gttatctaagaaagtgggtatctttatcactccctggcatgcagccagggcagccatgat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gttatctaagaaagtgggtatctttatcactccctggcatgcagccagggcagccatgat 948
Query: 202 tgaaaggtcctgggtctttgtcagaccagacattggctgcttccacttggtttggcttct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 tgaaaggtcctgggtctttgtcagaccagacattggctgcttccacttggtttggcttct 888
Query: 262 ctgaattagaaaaatgtgtccctttttctgagtggccatagcccctaaaccagaagttaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ctgaattagaaaaatgtgtccctttttctgagtggccatagcccctaaaccagaagttaa 828
Query: 322 gccctggccaggcaggggttcacatgtatgtggcagctctggggagccagttattctagt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gccctggccaggcaggggttcacatgtatgtggcagctctggggagccagttattctagt 768
Query: 382 ctgcttgcttgtacctctgtatcatggcccc--ccccccccccaggaagcagcctgccct 439
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 767 ctgcttgcttgtacctctgtatcatggccccatccccccc---aggaagcagcctgccct 711
Query: 440 gcatcctcagaagaaagggagagaccagtgggaggattttaggtttattaagtgacctct 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcatcctcagaagaaagggagagaccagtgggaggattttaggtttattaagtgacctct 651
Query: 500 gagaaaaaggcctgccctgggagcagcagagatggagtcagggacctatagggggcacag 559
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 650 gagaaaaaggcctgccctgggagcagcagagatggagtcagggacctagaggggacacag 591
Query: 560 gactaggaatggagcatcccaccttggagtcctgggccaggacccacag 608
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gactaggaatggagcatcccaccttggagtcctgggccaggacccacag 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
