BAC Information

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BAC

Clone NameMSMg01-324K04
Chromosome9 (Build37)
Map Location 105,594,609 - 105,758,622
singlet/doubletdoublet
Overlap geneE330026B02Rik, EG665033
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4
Downstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324K04.T7 (MSMg01no324_k04.b1)MSMg01-324K04.TJ (MSMg01no324_k04.g1)
ACCAG442734AG442735
length744747
length of high quality
(start - end)
699 (46 - 744)592 (78 - 669)
definitionCHROMAT_FILE: MSMg01no324_k04.b1 PHD_FILE: MSMg01no324_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:00 2005CHROMAT_FILE: MSMg01no324_k04.g1 PHD_FILE: MSMg01no324_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,757,927 - 105,758,622)(105,594,609 - 105,595,200)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACTGGCGGATTAAGAGGATGAGAAAGTAAAGCAGATTTGGA
GGGGAGAGGGGAATAAAAGGAGACTCAGAGGAGGTGAATGTTATCAGAGT
GTTTTACATGCTGTCTGGAAATGGCATAATGAAACCCATTATTTTGTACA
ATTATTATATTCTAATAAAATCACTTGATTTGGTTAAGGCAACAAGTAGT
TGCCAAACCAATGAGCATGTGAAAATGACTATGCTGGTGGGATAACACAC
GGACAATTTCATATGTGTTCCACATAGTTTTCCTTACTGTGACCGTTGTC
TTTTATATAATTGAAAAATAACACAGTCGGTTAATTTTAAGTAGCCAGTT
ATTGCTTTGGAAATTTCTAAAACAAAGCCTATTTAATAGTTTTGTTTTTC
TCTAAGAACTTTTGTCAGTGTGTCTTAATGGAAGCATGAAGGCCACAGCA
GACCCTTAAATCTGATAGCGATAATGGTGTCCAAGAATGTGAACCAATAG
ACACCACACCGCTGGTGGAAGATTGTTACAACTCGGGGCAACACTGAAGC
AATATCTGTCCCGTATCTAACCATATCCTTCAGCTCCATCAATAGGTGGA
TATATTAAGCTTTCACACATATACACAGGAACCATAGGAAACTATACGTT
GTGACAGAGTTAAAAGCAACCATGTATCCTAATGTATCATATGC
CGATGACTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGATTAAATAATTCAGATTTTCCA
ACTGGAGCCTAGCTCTAGTGAACCTTATACAAAGCAAGATGTGGCATGTT
CTAGATAAAGCAGGAGTGGACAGGTACTGACTGTAGCTTTCCATTCCTTG
TGGTCACAGATTCCTCCATCTGTGTAGATAATCGGGAGGCAGCCATGCTC
TGCTTACTGAGTAGAGGCAGTGGGATGAGTGGCACAGATGAGCTTGCTTC
TATTCCTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCG
CGCGTGCGTGCATACCCATATACATATCGTGCATCCAGAAAATGTACTTT
AGAAAGCAAATGTGTTGTTCATGTGGCAGGGATGCTTGCCCATTTTTACC
GCCCACCAATTTAGGCTCTGCCTGTCTCTGCTTTGGAGTCTGGCACAGCA
CGTAGGCAGCTTTGTGTCTTCAGTAAAAGTAGAGCTGAGTGCTTACACAA
AGCCTTGCTATGGGCTCGCCCTCTGGCCATCTGTCTTGATTGCCTGTGGC
AAGAGTCCACACCCTTTCTGTTACAGACCAGCTCCGGCATGTTTCCTCAA
ATCCACAGGGAATCCGGAGGCACGGCATTCTCGGGGTGCCATCTCATCTG
TCTGGCCAGCCCCTGCGCCTAGCAGGCAGACTCCTCAACCCATGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_k04.b1 MSMg01no324_k04.b1 CHROMAT_FILE:
MSMg01no324_k04.b1 PHD_FILE: MSMg01no324_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:00 2005
         (699 letters)



>mm_chr9_105757724_105758822
          Length = 1099

 Score = 1338 bits (692), Expect = 0.0
 Identities = 695/696 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggactggcggattaagaggatgagaaagtaaagcagatttggaggggagag 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ggaattccaggactgggggattaagaggatgagaaagtaaagcagatttggaggggagag 840

                                                                       
Query: 64  gggaataaaaggagactcagaggaggtgaatgttatcagagtgttttacatgctgtctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gggaataaaaggagactcagaggaggtgaatgttatcagagtgttttacatgctgtctgg 780

                                                                       
Query: 124 aaatggcataatgaaacccattattttgtacaattattatattctaataaaatcacttga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aaatggcataatgaaacccattattttgtacaattattatattctaataaaatcacttga 720

                                                                       
Query: 184 tttggttaaggcaacaagtagttgccaaaccaatgagcatgtgaaaatgactatgctggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tttggttaaggcaacaagtagttgccaaaccaatgagcatgtgaaaatgactatgctggt 660

                                                                       
Query: 244 gggataacacacggacaatttcatatgtgttccacatagttttccttactgtgaccgttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gggataacacacggacaatttcatatgtgttccacatagttttccttactgtgaccgttg 600

                                                                       
Query: 304 tcttttatataattgaaaaataacacagtcggttaattttaagtagccagttattgcttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcttttatataattgaaaaataacacagtcggttaattttaagtagccagttattgcttt 540

                                                                       
Query: 364 ggaaatttctaaaacaaagcctatttaatagttttgtttttctctaagaacttttgtcag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggaaatttctaaaacaaagcctatttaatagttttgtttttctctaagaacttttgtcag 480

                                                                       
Query: 424 tgtgtcttaatggaagcatgaaggccacagcagacccttaaatctgatagcgataatggt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgtgtcttaatggaagcatgaaggccacagcagacccttaaatctgatagcgataatggt 420

                                                                       
Query: 484 gtccaagaatgtgaaccaatagacaccacaccgctggtggaagattgttacaactcgggg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtccaagaatgtgaaccaatagacaccacaccgctggtggaagattgttacaactcgggg 360

                                                                       
Query: 544 caacactgaagcaatatctgtcccgtatctaaccatatccttcagctccatcaataggtg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 caacactgaagcaatatctgtcccgtatctaaccatatccttcagctccatcaataggtg 300

                                                                       
Query: 604 gatatattaagctttcacacatatacacaggaaccataggaaactatacgttgtgacaga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatatattaagctttcacacatatacacaggaaccataggaaactatacgttgtgacaga 240

                                               
Query: 664 gttaaaagcaaccatgtatcctaatgtatcatatgc 699
           ||||||||||||||||||||||||||||||||||||
Sbjct: 239 gttaaaagcaaccatgtatcctaatgtatcatatgc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no324_k04.g1 MSMg01no324_k04.g1 CHROMAT_FILE:
MSMg01no324_k04.g1 PHD_FILE: MSMg01no324_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:00 2005
         (592 letters)



>mm_chr9_105594409_105595400
          Length = 992

 Score = 1129 bits (584), Expect = 0.0
 Identities = 590/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattaaataattcagattttccaactggagcctagctctagtgaaccttatacaaagcaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gattaaataattcagattttccaactggagcctagctctagtgaaccttatagaaagcaa 260

                                                                       
Query: 61  gatgtggcatgttctagataaagcaggagtggacaggtactgactgtagctttccattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtggcatgttctagataaagcaggagtggacaggtactgactgtagctttccattcc 320

                                                                       
Query: 121 ttgtggtcacagattcctccatctgtgtagataatcgggaggcagccatgctctgcttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtggtcacagattcctccatctgtgtagataatcgggaggcagccatgctctgcttac 380

                                                                       
Query: 181 tgagtagaggcagtgggatgagtggcacagatgagcttgcttctattcctaagtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtagaggcagtgggatgagtggcacagatgagcttgcttctattcctaagtgtgtgt 440

                                                                       
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgtgcgtgcatacccatatacatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgtgcgtgcatacccatatacatat 500

                                                                       
Query: 301 cgtgcatccagaaaatgtactttagaaagcaaatgtgttgttcatgtggcagggatgctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtgcatccagaaaatgtactttagaaagcaaatgtgttgttcatgtggcagggatgctt 560

                                                                       
Query: 361 gcccatttttaccgcccaccaatttaggctctgcctgtctctgctttggagtctggcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcccatttttaccgcccaccaatttaggctctgcctgtctctgctttggagtctggcaca 620

                                                                       
Query: 421 gcacgtaggcagctttgtgtcttcagtaaaagtagagctgagtgcttacacaaagccttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacgtaggcagctttgtgtcttcagtaaaagtagagctgagtgcttacacaaagccttg 680

                                                                       
Query: 481 ctatgggctcgccctctggccatctgtcttgattgcctgtggcaagagtccacacccttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatgggctcgccctctggccatctgtcttgattgcctgtggcaagagtccacacccttt 740

                                                               
Query: 541 ctgttacagaccagctccggcatgtttcctcaaatccacagggaatccggag 592
           |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 ctgttacagaccagctccggcatgtttcctcaaatccacaggtaatccggag 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)