BAC Information

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BAC

Clone NameMSMg01-324K09
Chromosome9 (Build37)
Map Location 78,503,108 - 78,503,478
singlet/doubletsinglet
Overlap geneCd109
Upstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5
Downstream geneLOC384957, EG666456, LOC436085, LOC235509, LOC666479, Col12a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324K09.T7 (MSMg01no324_k09.b1)MSMg01-324K09.TJ (MSMg01no324_k09.g1)
ACCAG442744AG442745
length733736
length of high quality
(start - end)		687 (47 - 733)371 (78 - 448)
definitionCHROMAT_FILE: MSMg01no324_k09.b1 PHD_FILE: MSMg01no324_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:01 2005CHROMAT_FILE: MSMg01no324_k09.g1 PHD_FILE: MSMg01no324_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGCCATACCGAATGGCAGAGAAGCATCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGCC
ATATTACCAATGGATTTTAAGTAATCAGGCAGGTGCTAGTACCAGTTTGT
CAGCAATGCAACCCTGAGGCGATATGAGGTTGCTATGGCCAACCAAGTTA
ATACTGCTGACACCATAAGTCAGGTAGCAGAAAAAAACATCTGAGACATT
GCTTACACTACAAAGGGTGCATTCTCTTATTCGCCTCAGTTGCATTGCTG
ACTGGAACCTTTCATGAGAATTGAATGTTTCTGCCACACTTTCCAACACC
TCTGCTCATTTAGATAATGTGAAATCTAATAGAGTTATCAGAAATATGAC
TACTTCTCCAGTAGAAGTTTGTGCCAATCCTCCATTTTTCTTTATATTAG
CTGAATTTCAAAATAATACAGAATGGTTAGATTGTACAAATGTCACTTGT
TTTTTGATGCAATGCTGGAATGCAGCCAATTTCTTAGCCTTAGTGGTACA
TCTACCAACCTTTGTCCCTGTGCCTATTGAGGC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCCCGGACCAAAAAACCCC
CAAATTATCAATCTGACATCAGCTACTTTCCATAAATCTTTATTTGGTTG
ACACAGTGGAGACGGTGTTCAGCTAAGGTAGAACATCTTCGTGCAGGCGC
CATATTGCATTTATAAGTACACAGACGAAAGCAGTGGCTGGCTGTTCTTG
GTGGATAGAGAGAAGGCAGAGATGAGTAAAAGCATAAGGCCTCTCTAAGA
GCTGATCAATTAGTGTCTTTGATGAGCCCTTTAATTTGACTTATAAAGCC
CTTTGTGATCACTTTTAACCTGGGCAAAAGAATTCTGAAATCTAGTTTGT
TACATCTTTGTGATTCCAGCCCCTCTATCTTCCACGGTACTTTCCTATCC
ATGCCATGGCCTGGAACAGGGACCAGCAAAGTATTTTCCTGTGATGGGAC
TGTAAGCCATAGTATCTGTTTCAGTTGCTCATCTGTGTCTCTATAGAATG
ATAGCAGACACAGCCAACACATAAGCAAATGCCACTATCCTGCAGCAAGC
TTAGGCATCATCACACATTTCCCTTTTGTTTGTTCCAACCAGTTAAAATG
AGTAAAAGCCACTCTTAGCTTAGGCTGGCCATACCATTCTGCCACTCCTT
AACTGGAATTTTGTGTGTCACCCAGAGGCCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_k09.g1 MSMg01no324_k09.g1 CHROMAT_FILE:
MSMg01no324_k09.g1 PHD_FILE: MSMg01no324_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:01 2005
         (371 letters)



>mm_chr9_78502908_78503678
          Length = 771

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccccggaccaaaaaacccccaaattatcaatctgacatcagctactttccataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccccggaccaaaaaacccccaaattatcaatctgacatcagctactttccataaat 260

                                                                       
Query: 61  ctttatttggttgacacagtggagacggtgttcagctaaggtagaacatcttcgtgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttatttggttgacacagtggagacggtgttcagctaaggtagaacatcttcgtgcagg 320

                                                                       
Query: 121 cgccatattgcatttataagtacacagacgaaagcagtggctggctgttcttggtggata 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cgccatattgcatttataagtacacaggcgaaagcagtggctggctgttcttggtggata 380

                                                                       
Query: 181 gagagaaggcagagatgagtaaaagcataaggcctctctaagagctgatcaattagtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaaggcagagatgagtaaaagcataaggcctctctaagagctgatcaattagtgtc 440

                                                                       
Query: 241 tttgatgagccctttaatttgacttataaagccctttgtgatcacttttaacctgggcaa 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tttgatgagccctttaatttgacttagaaagccctttgtgatcacttttaacctgggcaa 500

                                                                       
Query: 301 aagaattctgaaatctagtttgttacatctttgtgattccagcccctctatcttccacgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 aagaattctgaaatctagtttgttacatctttgtgattccagcccctctatcttccatgg 560

                      
Query: 361 tactttcctat 371
           |||||||||||
Sbjct: 561 tactttcctat 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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