BAC Information

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BAC

Clone NameMSMg01-324M09
Chromosome9 (Build37)
Map Location 43,485,816 - 43,663,141
singlet/doubletdoublet
Overlap geneLOC384931, Pvrl1, LOC100042548
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream geneThy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324M09.T7 (MSMg01no324_m09.b1)MSMg01-324M09.TJ (MSMg01no324_m09.g1)
ACCAG442836AG442837
length717720
length of high quality
(start - end)		626 (67 - 692)558 (80 - 637)
definitionCHROMAT_FILE: MSMg01no324_m09.b1 PHD_FILE: MSMg01no324_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:10 2005CHROMAT_FILE: MSMg01no324_m09.g1 PHD_FILE: MSMg01no324_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,662,524 - 43,663,141)(43,485,816 - 43,486,372)
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGXXXXXXXX
XXXXXXXXXXXXXXXXCTTAGGCTACACAGTGAGTTCCAGGCCAGCCTAG
GCTACACAATGAATTCCAGGCCAGCCTGGGCTACACAGTGACTTCCAGGC
CAGCCTCAGCTTTATAATTGCAAATAAATGAGTGGGTTTATTTATTTATT
TATTTATTTTTAAAATTTAAATTTGTGCCTTAAAAGCTTGAGAAAAAAAG
CTTGTGCAGTGCTAGGTCTGGGCACCTAGTAAATGCTCGTCTGTTCATGT
CCTCCTGACAGGGGCTTCACAGGTGCAAGAACGGCTCCTGATGCCACCCC
TCGCCCCCGTGCCTGCTCAGAGAAATCTAAGATGCCTTCCAGAGAGGGAA
ACCCTTTCATTATAGGGCCAACTAGGCAAGGGCTCCTGAGTAAACAGCCT
GGCACAGGAAGCCCAGAGCCAGCAGTCCCGGTGTGTAATTGTTGATGTTG
TGTTTCTGCTTGGAGAGGCTTCAGTAGGAATACCCCTCACCCATGCGCCC
TCCGCCCTCAGAAAGCACTTTGCATCTCTGGCCTCATTGAATCCCCACAG
AGCCTATTTGGGAGGGCAGGGGTCAGGACTGGCCTCATTCCATGGAGGAG
GGACCCGGGCTTCCAACAGAGAAATCAGCAAACTGGGGGGGTGGGGGGGG
AGTTTAATTTTTTTTTC

TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGAGCAGGCTGGCC
TTTAACTCTCAGAGATCCACCTGCTTCTGCCTCCTAGGTAGGTGCTGTGA
TTAAAGATGTGTGCCTCTGTGTCCTGCTCAGGATAGACATATATGCCCCT
ATGTTCTGAGTGTGGACTTAACTTGGGGGGGATGGACTATTCAAGCCCAC
TGCGATATATTTTATTTTCCAAATCCTACTACCATGATGTGTAATATGCT
GAGGAGTATGAATTAAGAGTGTAATTCAAAGGTCACACTCTTCCCCCAAA
CTCCATCCCCTCCCCTCTTTCCTCATCTCAGGGTTTCTCCAAGGAATCAC
TAGACAAGCAAGCATCCTCTGCCACCATCACTGTCCTAGCTGGAAGGTGG
CCTTGCTCTTCCCATGGACTCCCACGTGCTCCTGAAGAACCAGGCCAAGC
TCTGCCACATATCAGATCCTTGGACAGCAGAGGTGTGGTGGCTAAGGAGT
GGGTGGCCTCTGGCATAGGAGCTTGGCTAGAAATACCAAGGGTCGCTAGA
AAGTGACCAGCAGCCCAGTGGGCAGGGGAAATGAAGAGGCTTAGACTGAT
AAGAGATGCATAAGACACTATAGCGCCCTCCTTGGAGATAAGGATTCACA
AGAGTCCAGCTTGTCACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_m09.b1 MSMg01no324_m09.b1 CHROMAT_FILE:
MSMg01no324_m09.b1 PHD_FILE: MSMg01no324_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:10 2005
         (626 letters)



>mm_chr9_43662181_43663206
          Length = 1026

 Score = 1135 bits (587), Expect = 0.0
 Identities = 612/621 (98%), Gaps = 4/621 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   taggctacacagtgagttccaggccagcctaggctacacaatgaattccaggccagcctg 62
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 961 taggctacacagtgagttccaggccagcttaggctacacagtgaattccaggccagcctg 902

                                                                       
Query: 63  ggctacacagtgacttccaggccagcctcagctttataattgcaaataaatgagtgggtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggctacacagtgacttccaggccagcctcagctttataattgcaaataaatgagtgggtt 842

                                                                       
Query: 123 tatttatttatttatttatttttaaaatttaaatttgtgccttaaaagcttgagaaaaaa 182
           ||||||||||||  ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 841 tatttatttatt--ttt-tttttaaaatttaaatctgtgccttaaaagcttgagaaaaaa 785

                                                                       
Query: 183 agcttgtgcagtgctaggtctgggcacctagtaaatgctcgtctgttcatgtcctcctga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 agcttgtgcagtgctaggtctgggcacctagtaaatgctcgtctgttcatgtcctcctga 725

                                                                       
Query: 243 caggggcttcacaggtgcaagaacggctcctgatgccacccctcgcccccgtgcctgctc 302
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 724 caggggcttcacaggtgcaagaacggctcctgatgccacccctcgtccccgtgcctgctc 665

                                                                       
Query: 303 agagaaatctaagatgccttccagagagggaaaccctttcattatagggccaactaggca 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 664 agagaaatctaagatgccttccagagagggaaaccctttcattatagggccagctaggca 605

                                                                       
Query: 363 agggctcctgagtaaacagcctggcacaggaagcccagagccagcagtcccggtgtgtaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agggctcctgagtaaacagcctggcacaggaagcccagagccagcagtcccggtgtgtaa 545

                                                                       
Query: 423 ttgttgatgttgtgtttctgcttggagaggcttcagtaggaatacccctcacccatgcgc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttgttgatgttgtgtttctgcttggagaggcttcagtaggaatacccctcacccatgcgc 485

                                                                       
Query: 483 cctccgccctcagaaagcactttgcatctctggcctcattgaatccccacagagcctatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cctccgccctcagaaagcactttgcatctctggcctcattgaatccccacagagcctatt 425

                                                                       
Query: 543 tgggagggcaggggtcaggactggcctcattccatggaggagggacccgggcttccaaca 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgggagggcaggggtcaggactggcctcattccatggaggagggacccgggcttccaaca 365

                                
Query: 603 gagaaatcagcaaact-gggg 622
           |||||||||||||||| ||||
Sbjct: 364 gagaaatcagcaaactagggg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_m09.g1 MSMg01no324_m09.g1 CHROMAT_FILE:
MSMg01no324_m09.g1 PHD_FILE: MSMg01no324_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:10 2005
         (558 letters)



>mm_chr9_43485616_43486572
          Length = 957

 Score = 1009 bits (522), Expect = 0.0
 Identities = 549/558 (98%), Gaps = 1/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagagcaggctggcctttaactctcagagatccacctgcttctgcctcctaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagagcaggctggcctttaactctcagagatccacctgcttctgcctcctaggt 260

                                                                       
Query: 61  aggtgctgtgattaaagatgtgtgcctctgtgtcctgctcaggatagacatatatgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgctgtgattaaagatgtgtgcctctgtgtcctgctcaggatagacatatatgcccc 320

                                                                       
Query: 121 tatgttctgagtgtggacttaacttgggggggatggactattcaagcccactgcgatata 180
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 321 tatgttctgagtgtggacttaactt-ggggagatggactattcaagcccactgcgatata 379

                                                                       
Query: 181 ttttattttccaaatcctactaccatgatgtgtaatatgctgaggagtatgaattaagag 240
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 380 ttttattttccaaatcctactaccataatgtgtcatatgctgaggagtatgaattaagag 439

                                                                       
Query: 241 tgtaattcaaaggtcacactcttcccccaaactccatcccctcccctctttcctcatctc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggaattcaaaggtcacactcttcccccaaactccatcccctcccctctttcctcatctc 499

                                                                       
Query: 301 agggtttctccaaggaatcactagacaagcaagcatcctctgccaccatcactgtcctag 360
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 500 agggtttctccagggaatcactagacaagcaggcatcctctgccaccatcactgtcctag 559

                                                                       
Query: 361 ctggaaggtggccttgctcttcccatggactcccacgtgctcctgaagaaccaggccaag 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgggaggtggccttgctcttcccatggactcccacgtgctcctgaagaaccaggccaag 619

                                                                       
Query: 421 ctctgccacatatcagatccttggacagcagaggtgtggtggctaaggagtgggtggcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctgccacatatcagatccttggacagcagaggtgtggtggctaaggagtgggtggcct 679

                                                                       
Query: 481 ctggcataggagcttggctagaaataccaagggtcgctagaaagtgaccagcagcccagt 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 ctggcataggagcttggctagaaataccaagggtcgatagaaagtgaccagcagcccagt 739

                             
Query: 541 gggcaggggaaatgaaga 558
           ||||||||||||||||||
Sbjct: 740 gggcaggggaaatgaaga 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space:   518956
Effective search space used:   518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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