BAC Information

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BAC

Clone NameMSMg01-324O10
Chromosome9 (Build37)
Map Location 78,667,188 - 78,667,835
singlet/doubletsinglet
Overlap geneEG666456
Upstream geneLOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324O10.T7 (MSMg01no324_o10.b1)MSMg01-324O10.TJ (MSMg01no324_o10.g1)
ACCAG442927AG442928
length719724
length of high quality
(start - end)		675 (45 - 719)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no324_o10.b1 PHD_FILE: MSMg01no324_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:19 2005CHROMAT_FILE: MSMg01no324_o10.g1 PHD_FILE: MSMg01no324_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCCGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAGACTTTTTG

TCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAACTAGAAAGATACCAGATC
CTACAGACTCAAACCTAAGCAACACAAAGGCTCAAGGACTTAAAGTAAGG
CTTCCTATTAAAGCATGGCAACAAGGCAGTTATGTCACCAGTACATATTA
AATCCATCTAATCTAGATGCCACAGAGGTCACACATTTGTGCAACACTCA
GCAAGAACTTCCTTTTCCTGCAGAAGTTAAAACACCTTCCACCTCTTCTT
TCCTAGCTAATGGAAACGGAATAACAAGCATTACAACTAACAAGGAAAAC
TCCCTCTGAACAGGCCTCTCTAGAGGTAGAAAATTAAAGTAGCATATACT
GTTTCAGCTCCAACTCTTATCTGGGGACAAAATTAGTATTAATCTGAAAT
TCCATGAATGGCTGCTGCCTAGGAAGACACAGAACACAGGCATTAATTTA
TCCCTGAATTTTATACTCAGAACTTCTCACATTAATTCTATTATAATTTT
CACTAGAATACATGTTAACTAAAAAAGTGCTTGCTTCCATAAGCCACATA
CTTTATAAAACACATCATTGTAAACATCACACAACAAGCTTTGTAATTAA
TTTCTAATTCGAAATTATGTATTTCAGATGGGCAGATTTTATTCTTATTT
TTCCAGTTTCTTAACACTGCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_o10.g1 MSMg01no324_o10.g1 CHROMAT_FILE:
MSMg01no324_o10.g1 PHD_FILE: MSMg01no324_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:20 2005
         (648 letters)



>mm_chr9_78666988_78668035
          Length = 1048

 Score = 1207 bits (624), Expect = 0.0
 Identities = 642/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccaactagaaagataccagatcctacagactcaaacctaagcaacacaaaggctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccaactagaaagataccagatcctacagactcaaacctaagcaacacaaaggctcaag 260

                                                                       
Query: 61  gacttaaagtaaggcttcctattaaagcatggcaacaaggcagttatgtcaccagtacat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttaaagtaaggcgtcctattaaagcatggcaacaaggcagttatgtcaccagtacat 320

                                                                       
Query: 121 attaaatccatctaatctagatgccacagaggtcacacatttgtgcaacactcagcaaga 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaaatccatctaatccagatgccacagaggtcacacatttgtgcaacactcagcaaga 380

                                                                       
Query: 181 acttccttttcctgcagaagttaaaacaccttccacctcttctttcctagctaatggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttccttttcctgcagaagttaaaacaccttccacctcttctttcctagctaatggaaa 440

                                                                       
Query: 241 cggaataacaagcattacaactaacaaggaaaactccctctgaacaggcctctctagagg 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 cggaataacaagcattacaactaacaaggaaaactccctctgaccaggcctctctagagg 500

                                                                       
Query: 301 tagaaaattaaagtagcatatactgtttcagctccaactcttatctggggacaaaattag 360
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaaaattaaagcagcatatactctttcagctccaactcttatctggggacaaaattag 560

                                                                       
Query: 361 tattaatctgaaattccatgaatggctgctgcctaggaagacacagaacacaggcattaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattaatctgaaattccatgaatggctgctgcctaggaagacacagaacacaggcattaa 620

                                                                       
Query: 421 tttatccctgaattttatactcagaacttctcacattaattctattataattttcactag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatccctgaattttatactcagaacttctcacattaattctattataattttcactag 680

                                                                       
Query: 481 aatacatgttaactaaaaaagtgcttgcttccataagccacatactttataaaacacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatacatgttaactaaaaaagtgcttgcttccataagccacatactttataaaacacatc 740

                                                                       
Query: 541 attgtaaacatcacacaacaagctttgtaattaatttctaattcgaaattatgtatttca 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgtaaacatcacacgacaagctttgtaattaatttctaattcgaaattatgtatttca 800

                                                           
Query: 601 gatgggcagattttattcttatttttccagtttcttaacactgcttta 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatgggcagattttattcttatttttccagtttcttaacactgcttta 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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