Query= MSMg01no325_c12.b1 MSMg01no325_c12.b1 CHROMAT_FILE:
MSMg01no325_c12.b1 PHD_FILE: MSMg01no325_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:38 2005
(493 letters)
>mm_chr9_111025448_111026342
Length = 895
Score = 888 bits (459), Expect = 0.0
Identities = 484/493 (98%), Gaps = 2/493 (0%)
Strand = Plus / Plus
Query: 3 ggaattcacacagctatatcatcttcttactctgtttctcccatgaaagagttatgaaat 62
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcacacagctagattatcttcttactctgtttctcccatgaaagagttatgaaat 262
Query: 63 catatattttatttaattttcttcattttattttgtatgcatgtgggtgtggctatgtaa 122
||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 263 catatattttattaaattttcttcattttattttgcatgcatgtgggtgtgggtatgtaa 322
Query: 123 gttagagaacaagttgaaagacttgggtctcctaccatctggctccagaaagatcaaatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttagagaacaagttgaaagacttgggtctcctaccatctggctccagaaagatcaaatt 382
Query: 183 ctggttgtgaaacttagggcaagcaagtgagccttctggccctgaagttgtacctttaaa 242
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ctggttgtgaaacttagggcaagcaagtgagccttctgtccctgaagttgtacctttaaa 442
Query: 243 ctcttgctttttagcagactacatagctgtctctttgtgctgtgtagtgaatggaagcgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctcttgctttttagcagactacatagctgtctctttgtgctgtgtagtgaatggaagcgt 502
Query: 303 tggtgttctctatgtttagtgagcacttaggtttaaagttctctaggtgatctcacttct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggtgttctctatgtttagtgagcacttaggtttaaagttctctaggtgatctcacttct 562
Query: 363 ttgactagaaagctgctgaacaactta--gttacaccctctgaccaaggttcatgtcctg 420
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 ttgactagaaagctgttgaacaacttactgttacaccctctgaccaaggttcatgtcctg 622
Query: 421 gctcactgctgagctgttgttccacagtcaagggtttctgaaggattcagcttgtagctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctcactgctgagctgttgttccacagtcaagggtttctgaaggattcagcttgtagctg 682
Query: 481 tactttataggtg 493
|||||||||||||
Sbjct: 683 tactttataggtg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 895
Length adjustment: 10
Effective length of query: 483
Effective length of database: 885
Effective search space: 427455
Effective search space used: 427455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_c12.g1 MSMg01no325_c12.g1 CHROMAT_FILE:
MSMg01no325_c12.g1 PHD_FILE: MSMg01no325_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:38 2005
(503 letters)
>mm_chr9_111238615_111239517
Length = 903
Score = 766 bits (396), Expect = 0.0
Identities = 429/440 (97%), Gaps = 1/440 (0%)
Strand = Plus / Minus
Query: 64 cttctaacaagcactaggcacaggcttcccacaatatactgtgtgcatcacaatatactg 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 903 cttctaacaagcactaggcacaggcttcccacaatatactgtgtgcatcacaatatac-g 845
Query: 124 atgcatcttacctgttaagaaagtatgtaatcactttaaactccagccaatgaaacttaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 atgcatcttacctgttaagaaagtatgtaatcactttaaactccagccaatgaaacttaa 785
Query: 184 ccctaagaagaaacccttccactatccagggtacacatgtagccctgggtcagtcacacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 784 ccctaagaagaaacccttccactatccagggtacacatgtagccctgggtcggtcacacc 725
Query: 244 aaataatctaggcatgcaagcccatccccaaatcaaggaatactcataaactttaaaaaa 303
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 724 aaataaactaggcatgcaagcccatccccaaatcaaggaatactcataaacttaaaaaaa 665
Query: 304 agtatgtaatcatgttcaactgtaaaatctctgtaacactgaccgtgacagagagggagg 363
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct: 664 agtatgtaatcatgttcaactgtaaaacctctgtaacactgagtgtgacagagaggaagg 605
Query: 364 gaagccggctgcttactgtccctggtgctaatcaccgtctggacagcagaagcatgagaa 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaagcaggctgcttactgtccctggtgctaatcaccgtctggacagcagaagcatgagaa 545
Query: 424 gtgtcctatgactggtgttcagaaaaagagtgagatttctgtgtaagcacagtagttatt 483
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 544 gtgtcctaagactggtgttcagaaaaagagtgagatttctgtgtaagcacagaagttatt 485
Query: 484 tcttgttccttttactcaaa 503
||||||||||||||||||||
Sbjct: 484 tcttgttccttttactcaaa 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
