BAC Information

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BAC

Clone NameMSMg01-326A22
Chromosome9 (Build37)
Map Location 77,337,675 - 77,338,023
singlet/doubletsinglet
Overlap geneLrrc1
Upstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
Downstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326A22.T7 (MSMg01no326_a22.b1)MSMg01-326A22.TJ (MSMg01no326_a22.g1)
ACCAG443782AG443783
length792731
length of high quality
(start - end)
232 (143 - 374)349 (329 - 677)
definitionCHROMAT_FILE: MSMg01no326_a22.b1 PHD_FILE: MSMg01no326_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:41 2005CHROMAT_FILE: MSMg01no326_a22.g1 PHD_FILE: MSMg01no326_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGCCTACTCCTCCTCTGTNNNGTTTCCCACCTNCCCCCCCCCACAAAAA
NANNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXACATACTGACCCAG
GGCGGAATTCCTACCTTTTCCCAGCTCAAGGAATCACATGGTACATGGAA
TCCAACTGACATTAGCTGTGCACCGATGTAGAGGAATTTTAATCTAGCAA
CATGGCTATTCTGGCTGGAATACAGAAACAAGCAGATCTCTCAGTTCAAG
GCCAGCCTGGGACAGAGCAAGTTCCAGATACAGAAAAGCTTATATCCAGG
AATGGGGGTTCATGCCTTTAACCCCGGCACTCAGCAGTCAGTTCTGTTTG
GACAGTTGAGTTCAGTGCAGTGAAACTGTATTCAGGAAGTTGAGTTATCA
GGTGAGAGTCATAGCAGTGAGCACGGTGCACCGGAGTTGAGTTTGTTCAT
GGGTGCATGCAGTTCTGTACAGCCCCCCATAAGCAGGAGATCAGAACAAA
TCACCAGAGTTAGTGTGAGACCAAGCAGAGCAATTCAGTGAGAAGCCAAG
AGAAGACAGATTGAATCAGTCAGCTTGGAGAGGAGTTTGAGCCAGGACAG
CTGAGTTGACGCAACCAGCCAGAAGTCTGAAACAGCTAGAAAGGGTGAGT
CTATTCACCATAAGCCTCTGTCCCAGTACACAATTACATCCAGGCTTACA
ACTTACTTTTATACACACCTAATGTTCATAACGACGAAAATACCTCCCTT
AATTCCAAATGTGAAGCCTACAAAGAGAGATTGGATCTATCG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGATTAGGGGTGA
ACTATAGAAGGTTTCGCGAAATTCCTGCCTGATTCTGAAGTTGGGGAGTG
TGGTTGGCTTCATCAACTGTGTCTGTTTAAATGTTTATCTCACCTGGAAG
CATCCTCTCACACACACCCAGAGAGAGAGGTTAGTTTGGCACACTGAGCT
GTGGTCAAGTTAATGCATAAACTTACTCACACCTAGCAAACACCCATGCA
GACAGTCACATCCACATGATCCTGTGGTCATGCTACTGCCTGCCAGCAGC
GAGCTCCGCATTTGTAGGAATTTCTCCTTGTACCCCAGAACAGAACAGAA
CAGAACAGAGTAGAGCTCTTCCCACATCTGCAGAAAGGTCATACAGCCAG
AGTCAGGTCAAGACCACCGCCCCCCAATGGTAGTTAGTAGACAGCATTAT
TACGCTAATAAGTGTGATTTCTAACGTGAAACCTGAGACTTAACTTTAAA
ATAGAATTTAAAAGTTGGTGTTTTACTTTGTGGAATCCTTGAAGCACTTG
ATTTAAGCGACACAAGGTCATGAAAGGATTTGGAGCCAGCGATTGATACT
TAACAGATTGCTTTGGCCTTTTCAAGTTCTAGTTTGCTTGTCTGTGAAGT
GAAGACTTTAGGTATCGAATTAACAAATACGCTGCACGCAGTGCTTAGAG
CAGCACCTTGTATGGAGGACCACAGCAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_a22.g1 MSMg01no326_a22.g1 CHROMAT_FILE:
MSMg01no326_a22.g1 PHD_FILE: MSMg01no326_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:41 2005
         (349 letters)



>mm_chr9_77337439_77338187
          Length = 749

 Score =  555 bits (287), Expect = e-162
 Identities = 334/357 (93%), Gaps = 16/357 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaccccagaacagaacagaacagaacagagtagagctcttcccacatctgcagaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgtaccccagaacagaacagaacagaacagagtagagctcttcccacatctgcagaaagg 526

                                                                       
Query: 61  tcatacagccagagtcaggtcaagacca------ccgccccccaatggtagttagtagac 114
           ||||||||||||||||||||||||||||        |    |||||||||||||||||||
Sbjct: 525 tcatacagccagagtcaggtcaagaccattggtg--g----ccaatggtagttagtagac 472

                                                                       
Query: 115 agcattattacgct--aataagtgtgatttctaacgtgaaacctgagacttaactttaaa 172
           | ||||||||  ||  |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 471 aacattatta--cttgaataagtgtgatttctaacgtgaaacctcagacttaactttaaa 414

                                                                       
Query: 173 atagaatttaaaagttggtgttttactttgtggaatccttgaagcacttgatttaagcga 232
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 413 atagaatttaaaagttggtgttttaccttgtggaatccttgaagcacttgctttaagcga 354

                                                                       
Query: 233 cacaaggtcatgaaaggatttggagccagcgattgatacttaacagattgctttggcctt 292
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 353 cacaaggccatgaaaggatttggagccagcgattgatacttgacagattgctttggcctt 294

                                                                    
Query: 293 ttcaagttctagtttgcttgtctgtgaagtgaagactttaggtatcgaattaacaaa 349
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 293 ttcaagttctagtttgcttgtctgtgaagtgaagactttaggtatcggattaacaaa 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)