Query= MSMg01no326_k01.b1 MSMg01no326_k01.b1 CHROMAT_FILE:
MSMg01no326_k01.b1 PHD_FILE: MSMg01no326_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:22 2005
(443 letters)
>mm_chr9_75035482_75036323
Length = 842
Score = 721 bits (373), Expect = 0.0
Identities = 418/433 (96%), Gaps = 1/433 (0%)
Strand = Plus / Minus
Query: 11 ttatactcccagcttcgaggaccctcattccagggacccctatacccgactagggtggtc 70
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttatacacctagcttccaggaccctcattccagggacccctatacccgactagggtggtc 583
Query: 71 cgtggcgactctacttgagtatcttgggacttttcaggagtgtttgaacttctggtaaat 130
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cgtggcaactctacttgagtatcttgggacttttcaggagtgtttgaacttctggtaaat 523
Query: 131 caggttacttgatctgttcagccagtctgaagggagggaagacaggcatctcctgctgct 190
|||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 522 caggttacatgatgtgttcagccaatctgaagggagggaagacaggcatctcctgctgct 463
Query: 191 gccatcctggggagtgagcagctggttctttcctcatcttgcctgtcttggctcggatgt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gccatcctggggagtgagcagctggttctttcctcatcttgcctgtcttggctcggatgt 403
Query: 251 agcattctggagatgctccatgtgcttcccacattcagtgacttgaattctgaaagagct 310
|||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 402 agcattttggagatgctccgtgtgtttcccacattcagtgacttgaattctgaaagagct 343
Query: 311 gtacctcatgaagcaccccattattgctaacagctgaaaagaaggtgagtggagaaattc 370
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 342 gtacctcatgaagca-cccattattgccaacagctgaaaacaaggtgagtggagaaattc 284
Query: 371 acgcctgcaacttcacttaagcacttaagaggggtttgattctcaatttagaggacatga 430
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 283 aagcctgcaacttcacttaagcacttaagaggggcttgattctcaatttagaggacatga 224
Query: 431 gttcaaatttcag 443
|||||||||||||
Sbjct: 223 gttcaaatttcag 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_k01.g1 MSMg01no326_k01.g1 CHROMAT_FILE:
MSMg01no326_k01.g1 PHD_FILE: MSMg01no326_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:22 2005
(493 letters)
>mm_chr9_74883720_74884612
Length = 893
Score = 853 bits (441), Expect = 0.0
Identities = 480/497 (96%), Gaps = 8/497 (1%)
Strand = Plus / Plus
Query: 1 atacctagctgagactggccttgaactgaagttcctctctccctctctccacttggaaag 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacctagctgaaactggccttgaactgaagttcctctctccctctctccacttggaaag 260
Query: 61 ttctgggattacaggttgcaaagtcctggaactacagttgatttggggacaaactgagcc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccgggattacaggttgcaaagtcctggaactacagttgatttggggacaaactgagcc 320
Query: 121 attctcaagggatatctttgtccaagagttagcctcttaaacccttttatcttaagttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 attctcaagggatatctttgtccaagagttagcctcttaaacccttttatcttaaattgt 380
Query: 181 tacttggctggttaaccctttccttccttctccaacaagaactcttaatcgttttgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttggctggttaaccctttccttccttctccaacaagaactcttaatcgttttgtttt 440
Query: 241 tcaaattgaagtatcagtcaagacttcctgtctgaaatcctgcacatgctggggttttgg 300
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tcaaactgaagtatcagtcaagacttcctgtctgaaattctgcacatgctggggttttgg 500
Query: 301 gtttgcttggcctttgcaattgttattgttgttgtcttgcccc----accttacttttga 356
|||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct: 501 gtttgcttggcctttgtaattgttattgttgttgtcttg----ttttagtttacttttga 556
Query: 357 cacggggcctcacatagcccaggctagcctcaaactcaagctgaggataactttgaactt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cacggggcctcacatagcccaggctagcctcaaactcaagctgaggataactttgaactt 616
Query: 417 cttgatccttctgcctctatctccccagtcctaggacttcaagcattgcaccactatact 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttgatccttctgcctctacctccccagtcctaggacttcaagcattgcaccactatact 676
Query: 477 tgtttaatctgctgctt 493
|||||||||||||||||
Sbjct: 677 tgtttaatctgctgctt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
