BAC Information

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BAC

Clone NameMSMg01-326L07
Chromosome9 (Build37)
Map Location 40,172,979 - 40,173,226
singlet/doubletsinglet
Overlap geneGramd1b
Upstream geneOlfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b
Downstream geneLOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326L07.T7 (MSMg01no326_l07.b1)MSMg01-326L07.TJ (MSMg01no326_l07.g1)
ACCAG444257AG444258
length804796
length of high quality
(start - end)
248 (124 - 371)249 (132 - 380)
definitionCHROMAT_FILE: MSMg01no326_l07.b1 PHD_FILE: MSMg01no326_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:27 2005CHROMAT_FILE: MSMg01no326_l07.g1 PHD_FILE: MSMg01no326_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATATATCTTCTCTTTCTCCATCATTATACCACTTNGGGACCCTCNCNN
CNTTCTATAATTGCGGCCGCTATACGACTCAAGATTTTCAGAATAGCGCG
GAATTCTTAGTATTGTCAACGAATGCATAGTTAAATTAAAACAGAATATA
GTGGGAACTTGAAAAGAACTGTAGAAGCATTGTAGTCTGAGGTTCATCAG
CCCAAAAGGGGACAGGGAAATCTCAAGTGTGATACTGCTATCACCTTAGA
GATGAGGGTATGTCCCGCTAAGATCACACCCTTCCTTGTGATTAAATACC
AGAGCTAGTTCCAGCGTCCAGTGAAGTAGTCAAGCAACTATGCCCACGTG
TGGCAAGATGGAAAAGTTCTATTTTTGATGTCAAAACAGAGCTTGAAAGG
TGGCTCACTTGAAAGAAGGGTAGAGCTGACTGCAAGTGACCCTGAGTTCT
CAGAAGGCAAAGACGGAACACATAATAATCATAGTTCTTCATCTCCCTCT
AGAATGGGACGATCTATCTTGATTTGTCGGAAGGCAAGGGTTGTAGCTAC
GTTCTTCCTATAATGTCAAGCATACTATGGACTTGATAGCACCTTATATT
CACAAAGTGCCTTGCCAGTGTTCTGCCTCCCTTCCTCTACGTTTCCCGTA
CTGTCTCTCTCTACATTTACCATCCTGGAATAAAGTGGCATTTATTATGT
TTTTCCATCCTATGCCGAGCGCTGGTTAAACTCCTTATTTTCTACGCCCC
GCCTGCTCCTAACATTTCGTTATTTCCTTTCTGATTTATCGATTGTTACA
GATA
TCCTCTCCTTCTTTTTTCCCCCCTCTTCTTCCTCTTCCNCCTCCCTTCTT
TNTTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGAGGAATCTCCAA
TGGCCAAGAAGCACGTAAAGAAACGTTCACTATCCTTAGTCATTAAGGAA
ATGCAAGTCAAAACCACCCTGAGATTCCACCCACACCAACCAGAATGGCT
AAGATCAAGCACAGCACATGCTGGTGAGGAGGTGGAGAAAGGAGAGCACT
CCTCGGTGCTTGTGACTTACACAGAGCTGATGGTGAATGGACATGGCGTG
TCTGAGAAATACAGCTAAAACCAGGCAATTCATGATATGGGTGTGTGTTT
GAGCGGAACACAGAATGAAGCTGAATGAGTTTATTAGGAAAAGATGAGGA
AAAGTCTTTATAAGCAAATCAGACTAACTTACATGTGAGTCTGTAAGGAG
GAGGAAGATAGTGAGACCATGTGTTGGTAAGGACCCCGAGAGCATATACT
GTGGCGGACCCTGTTGAGAATCGTACATAGCTGGATCTCAAATGTGGGGC
ACTTTTGTTCCCTTCTTCTTAACCTCTCTCACAGTATCTCTGGAATATGG
TTTGCCCTCCGTGATGGCCTTTGTTAACACAAAAATCTAGTGCGTTTACG
TCTATCACCTGATGTAATACAGTGTTACTTTCAATTTCCCGCGCTTTAAC
ATGATATTATTTGCATTAACTGAGGGTCAAAACCTCATTATCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_l07.b1 MSMg01no326_l07.b1 CHROMAT_FILE:
MSMg01no326_l07.b1 PHD_FILE: MSMg01no326_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:27 2005
         (248 letters)



>mm_chr9_40172779_40173426
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcatagttaaattaaaacagaatatagtgggaacttgaaaagaactgtagaagcattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcatagttaaattaaaacagaatatagtgggaacttgaaaagaactgtagaagcattgt 260

                                                                       
Query: 61  agtctgaggttcatcagcccaaaaggggacagggaaatctcaagtgtgatactgctatca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctgaggttcatcagcccaaaaggggacagggaaatctcaagtgtgatactgctatca 320

                                                                       
Query: 121 ccttagagatgagggtatgtcccgctaagatcacacccttccttgtgattaaataccaga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ccttagagatgagggtatgtcccgctaaggtcacacccttccttgtgattaaataccaga 380

                                                                       
Query: 181 gctagttccagcgtccagtgaagtagtcaagcaactatgcccacgtgtggcaagatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctagttccagcgtccagtgaagtagtcaagcaactatgcccacgtgtggcaagatggaa 440

                   
Query: 241 aagttcta 248
           ||||||||
Sbjct: 441 aagttcta 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)