BAC Information

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BAC

Clone NameMSMg01-327E07
Chromosome9 (Build37)
Map Location 74,568,630 - 74,731,896
singlet/doubletdoublet
Overlap geneOnecut1
Upstream geneUnc13c, Wdr72, Nr1h2-ps, LOC100040764
Downstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327E07.T7 (MSMg01no327_e07.b1)MSMg01-327E07.TJ (MSMg01no327_e07.g1)
ACCAG444672AG444673
length774768
length of high quality
(start - end)
292 (73 - 364)331 (76 - 406)
definitionCHROMAT_FILE: MSMg01no327_e07.b1 PHD_FILE: MSMg01no327_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:08 2005CHROMAT_FILE: MSMg01no327_e07.g1 PHD_FILE: MSMg01no327_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,731,609 - 74,731,896)(74,568,630 - 74,568,784)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGACGGATCCGCGGA
ATTCCAGCATTAGCGGAGAGCTGGTTTATGGGGATAGTTGAAGGAGGCAA
ACCTGGGCTACATTACAAGATCCAGTCTCAATCCACTCTCCATCCACCAC
CAAAAGGAAATGGACTCCTCAAGAGGTGTGGGTTGAACTGTGTGGTCATC
TCTTGGTGCAGTTGGGCAGACCCTCTGTTCCACATCTGTTTGTCTCACTG
TTCTTATAAGTCAGTATCAGTCCTTGGTCTTGTAGGCAGAGATGAGTACG
AGGTGGGGGCAGACTAGGAATATAAGGCCTTTTAGCCTCTATGTGGAAGG
GGAGAGATGGTAGTTGAGGGCATAACACATACACATAATTAAAAAGTATT
TTAGGGCTGGCGAGACCCCCCCACCGGGNAAAAGCACTGACTGCTCTTCT
GAAGATCCTGAGTTCGAATTCCAGCAATCACATGGTGGCTCACAACCAAC
CATAATGAGATCTGATGCCCTCTTCTGGAGTGTCTGAGGCCAGCTATTGT
TGTTTTACATATAATAATACATTACTCCTTTTAAACAAAAGAATTTGAGA
GACCTTTCAACCATTTGCATTCTCCACGACCGTTATAGCCCCTACACGCT
ATGATTCGTTTTGTCTCTTTTGTCTTTATTTTCACGCCTATCTTGATCAC
CAATAGGGCCTTTTCCGCCTTTTCCTGTCCCCCACTTATCCATATTCGCT
TATTCTCCCCACGCCACTAGCCAC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGACATATGTCCATCAGAGCAAAT
AAAGCTTGAGGTGACTCAGCTTGTGATGGAAGATGACCTGACTGGTGACC
CTGCAGGTCACTATTCCATTCTAGCTAGCTAAAAGGCAGAGAGTTGATGA
AAGAAGGAAATTAGATGAACTATTGTTTTTGTTTTGTTTTGGTTTGGCTT
GGTTTTTTGGGTTTTTTTTATTTTTTATTATTACATATTTTCCTCAATTA
CATTTAGAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCCCCGACA
CTTCCCTACCCACCCACTCCCATTTTTTGGCCCTGGCATTCCCCTGTACT
GGGGCATATAAAGTCCCCCCCCCCCTTTGGGCCTCTCTTTCCAGTGATGG
CCGACTAAGCCATCTTTTGATATATATGCAGCTACAGTCCACAGCTCTGG
CTCACTGGCTAGTTCATATCTGTTGCTGCCCCCACAGCCCCCGTTCATCT
CTTTTACTCCTTGAATCCCTTCCCCAATTCCTCCTTTGGTCCCCCATTGT
TCCCACCCCCATTTGACTTGTTGTCATCCATTTCCGCTTCTCTGCCCCCC
TTCTGCCCCCGCCTTTCCCTTGTCTGCTACTATTGGCCCCTCTTGCTATT
TTCTTCCGCCCGTCACCTTCTTCCTTTATTCGTACTCTCCGCTTCCTTTT
TCCCACTATTTATCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_e07.b1 MSMg01no327_e07.b1 CHROMAT_FILE:
MSMg01no327_e07.b1 PHD_FILE: MSMg01no327_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:08 2005
         (292 letters)



>mm_chr9_74731349_74732040
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtttatggggatagttgaaggaggcaaacctgggctacattacaagatccagtctcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 548 ggtttatggggatagttgaaggaggcaaacctgggctacattacaagatccagtctcaac 489

                                                                       
Query: 61  ccactctccatccaccaccaaaaggaaatggactcctcaagaggtgtgggttgaactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccactctccatccaccaccaaaaggaaatggactcctcaagaggtgtgggttgaactgtg 429

                                                                       
Query: 121 tggtcatctcttggtgcagttgggcagaccctctgttccacatctgtttgtctcactgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggtcatctcttggtgcagttgggcagaccctctgttccacatctgtttgtctcactgtt 369

                                                                       
Query: 181 cttataagtcagtatcagtccttggtcttgtaggcagagatgagtacgaggtgggggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttataagtcagtatcagtccttggtcttgtaggcagagatgagtacgaggtgggggcag 309

                                                           
Query: 241 actaggaatataaggccttttagcctctatgtggaaggggagagatgg 288
           |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 308 actaggaagagaaggccttttagcctctatgtggaaggggagagatgg 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no327_e07.g1 MSMg01no327_e07.g1 CHROMAT_FILE:
MSMg01no327_e07.g1 PHD_FILE: MSMg01no327_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:08 2005
         (331 letters)



>mm_chr9_74568430_74569160
          Length = 731

 Score =  284 bits (147), Expect = 4e-81
 Identities = 153/155 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacatatgtccatcagagcaaataaagcttgaggtgactcagcttgtgatggaagatg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacatatgtccatcagatcaaataaagcttgaggtgactcagcttgtgatggaagatg 260

                                                                       
Query: 61  acctgactggtgaccctgcaggtcactattccattctagctagctaaaaggcagagagtt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgcctggtgaccctgcaggtcactattccattctagctagctaaaaggcagagagtt 320

                                              
Query: 121 gatgaaagaaggaaattagatgaactattgttttt 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgaaagaaggaaattagatgaactattgttttt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)