BAC Information

Click to search

BAC

Clone NameMSMg01-327F22
Chromosome9 (Build37)
Map Location 66,102,987 - 66,164,867
singlet/doubletdoublet
Overlap geneDapk2
Upstream geneCilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327F22.T7 (MSMg01no327_f22.b1)MSMg01-327F22.TJ (MSMg01no327_f22.g1)
ACCAG444746AG444747
length742745
length of high quality
(start - end)		594 (49 - 642)664 (80 - 743)
definitionCHROMAT_FILE: MSMg01no327_f22.b1 PHD_FILE: MSMg01no327_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:15 2005CHROMAT_FILE: MSMg01no327_f22.g1 PHD_FILE: MSMg01no327_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,102,987 - 66,103,577)(66,164,204 - 66,164,867)
sequence
AGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGACACCTTGACTTCCCTATGTAGGGCAGTGCTGGGGTTGGG
GTACCTACCTGAATGTTGAGCAGTAAAGGACACAGGAGAGAGCTGACTGC
TGCTCCCAGAAGTGTCCTCATGGGTCATTTGTTTTCCCCGTCCTCATTGC
AGGAAACGGCTTACCATCCAAGAGGCTCTCAGACATCCCTGGATCACGGT
AAGGGCATGGTAATGAGCCCCAGTGAGCAGGAGGCCCCTCTTCTGCCACC
AGGGCTGGCTGTGGCAGTCGGATATAATCAGCTGTTAAGAGGCCTTTGCT
TGAGCTCGGGGACTGGTCAAGGGTCCTCAGAGGGCCAATGCTTGTTCAGA
TGGGGTTGTGCTGGCTCCGTTCCACACAGCTTGCCACACTTGCATGAGGC
CGTGCAGTCCATGTAGTGCACCACAAAAGCAAACAAGAGTGAATAAAATA
GGGTTATGCTGCCTTAGGTTTGCATTTCGTGGGTTCAGAGAGCAGTGCAC
TAACACGGACATCAGTTAAGATGCTTTTTCTTATAAAATGTAATTTGTTG
GGAGTCATCTCTCTGTCCCTTTTCACTGCAGAAGTTGGGTTATACACAGA
TCTCAGGCACTGAAACCTTGACTTTGTAATCAGGTATATCTCTTTTTCTG
ACTACTAGGCTCTCACTACAGTCACATCACTTTAATTGGCGC

NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTACACTGTCCTTAGGAG
ACCTCTGTGCTCCATTTTCATCACTCCAGGCTCTAAGTTACTAAGATTTT
CAAGCCTATTGAGGCAGCTGAAGCTAGGTCTTTTCCCTCTTTCAAAGCAG
GTAGCTGTCTCCTTCTCTCACCCTGAAGAAGAGCTCTGCCCCTTGCTGGA
TGCCTAGGGCATCCACTTAATGGAGCCCTTAGGATACAGTCAGTGGTGGT
CGCAGGCAGAGCATGCTGGGGACTCGGGATGCTAAGAAAAAGGGATACCA
AGGGAGAAGCCTGAAGTTCCTTGGCATCTTCGTCTCCCTCCTACTCTTTT
CTCTTCAAGCTCTGTAGAACAGCTGGCACCAACACTAAGCCCTTGCTCCC
TGATGAGCTCCAGAGTGAGTGGGAGGAACACAGAGAGGAACAGGAGGCCA
GGAGGGCACTAACCAGGCAGCATCCTTGAAAAGAGCTGGCAGCACATCTG
AGGTTAGAGAACTCCACATCATCTCCTAAGCAGTCTCTGTGTTACAGAGG
TCCCCAACACCACCCTCTGGGAAGAAATTCTGGACCTGGGTGGGCCAAGG
AGTCTGGCCTTCAGTTCCCGTCAGTGGTCGGAGAAGCATTTATTANAAAT
GAAGCCAGGTGTGCTGGCACATATCCACAAGCCCAGCACTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_f22.b1 MSMg01no327_f22.b1 CHROMAT_FILE:
MSMg01no327_f22.b1 PHD_FILE: MSMg01no327_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:15 2005
         (594 letters)



>mm_chr9_66102784_66103777
          Length = 994

 Score = 1027 bits (531), Expect = 0.0
 Identities = 576/591 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagacaccttgacttccctatgtagggcagtgctggggttggggtacctacctg 63
           ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatgcagacaccctgatttccctatgtagggcagtgctggggttggggtacctacctg 263

                                                                       
Query: 64  aatgttgagcagtaaaggacacaggagagagctgactgctgctcccagaagtgtcctcat 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgttgagcagtaaaggatacaggagagagctgactgctgctcccagaagtgtcctcat 323

                                                                       
Query: 124 gggtcatttgttttccccgtcctcattgcaggaaacggcttaccatccaagaggctctca 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggtcatttgtcttccccgtcctcattgcaggaaacggcttaccatccaagaggctctca 383

                                                                       
Query: 184 gacatccctggatcacggtaagggcatggtaatgagccccagtgagcaggaggcccctct 243
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct: 384 gacatccctggatcacggtaagggcatggtaatgagccctagtgggcaggaggtccctct 443

                                                                       
Query: 244 tctgccaccagggctggctgtggcagtcggatataatcagctgttaagaggcctttgctt 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgccatcagggctggctgtggcagtcggatataatcagctgttaagaggcctttgctt 503

                                                                       
Query: 304 gagctcggggactggtcaagggtcctcagagggccaatgcttgttcagatggggttgtgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagctcggggactggtcaagggtcctcagagggccaatgcttgttcagatggggttgtgc 563

                                                                       
Query: 364 tggctccgttccacacagcttgccacacttgcatgaggccgtgcagtccatgtagtgcac 423
           ||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 tggctccgttctagagagcttgccacgcttgcatgaggccgtgcagtccatgtagtgcac 623

                                                                       
Query: 424 cacaaaagcaaacaagagtgaataaaatagggttatgctgccttaggtttgcatttcgtg 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 cacaaaagcaaacaagagtgaataaaatagggttatgctaccttaggtttgcatttcgtg 683

                                                                       
Query: 484 ggttcagagagcagtgcactaacacggacatcagttaagatgctttttcttataaaatgt 543
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 684 ggttcagagagcagtgcactaacagggacatcagttaagatgctttttcttataaaatgt 743

                                                              
Query: 544 aatttgttgggagtcatctctctgtcccttttcactgcagaagttgggtta 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aatttgttgggagtcatctctctgtcccttttcactgcagaagttgggtta 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_f22.g1 MSMg01no327_f22.g1 CHROMAT_FILE:
MSMg01no327_f22.g1 PHD_FILE: MSMg01no327_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:16 2005
         (664 letters)



>mm_chr9_66164004_66165067
          Length = 1064

 Score = 1239 bits (641), Expect = 0.0
 Identities = 658/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttacactgtccttaggagacctctgtgctccattttcatcactccaggctctaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cctttacactgtccttaggagacctctgtgctccattttcatcactccaggctctaagtt 805

                                                                       
Query: 61  actaagattttcaagcctattgaggcagctgaagctaggtcttttccctctttcaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 actaagattttcaagcctattgaggcagctgaagctaggtcttttccctctttcaaagca 745

                                                                       
Query: 121 ggtagctgtctccttctctcaccctgaagaagagctctgccccttgctggatgcctaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggtagctgtctccttctctcaccctgaagaagagctctgccccttgctggatgcctaggg 685

                                                                       
Query: 181 catccacttaatggagcccttaggatacagtcagtggtggtcgcaggcagagcatgctgg 240
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 catccacttaatggggcccttaggatacagtcagtggtggttgcaggcagagcatgctgg 625

                                                                       
Query: 241 ggactcgggatgctaagaaaaagggataccaagggagaagcctgaagttccttggcatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggactcgggatgctaagaaaaagggataccaagggagaagcctgaagttccttggcatct 565

                                                                       
Query: 301 tcgtctccctcctactcttttctcttcaagctctgtagaacagctggcaccaacactaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct: 564 tcgtctccctcctactcttttctcttcaagctctgtagaacagctgggagcaacaccaag 505

                                                                       
Query: 361 cccttgctccctgatgagctccagagtgagtgggaggaacacagagaggaacaggaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccttgctccctgatgagctccagagtgagtgggaggaacacagagaggaacaggaggcc 445

                                                                       
Query: 421 aggagggcactaaccaggcagcatccttgaaaagagctggcagcacatctgaggttagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggagggcactaaccaggcagcatccttgaaaagagctggcagcacatctgaggttagag 385

                                                                       
Query: 481 aactccacatcatctcctaagcagtctctgtgttacagaggtccccaacaccaccctctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactccacatcatctcctaagcagtctctgtgttacagaggtccccaacaccaccctctg 325

                                                                       
Query: 541 ggaagaaattctggacctgggtgggccaaggagtctggccttcagttcccgtcagtggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaagaaattctggacctgggtgggccaaggagtctggccttcagttcccgtcagtggtc 265

                                                                       
Query: 601 ggagaagcatttattanaaatgaagccaggtgtgctggcacatatccacaagcccagcac 660
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagaagcatttattaaaaatgaagccaggtgtgctggcacatatccacaagcccagcac 205

               
Query: 661 tctg 664
           ||||
Sbjct: 204 tctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |