BAC Information

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BAC

Clone NameMSMg01-327I22
Chromosome9 (Build37)
Map Location 17,548,771 - 17,549,138
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710
Downstream geneLOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327I22.T7 (MSMg01no327_i22.b1)MSMg01-327I22.TJ (MSMg01no327_i22.g1)
ACCAG444885AG444886
length726747
length of high quality
(start - end)		376 (45 - 420)340 (76 - 415)
definitionCHROMAT_FILE: MSMg01no327_i22.b1 PHD_FILE: MSMg01no327_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:29 2005CHROMAT_FILE: MSMg01no327_i22.g1 PHD_FILE: MSMg01no327_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTAAGACTCTCTCAGTCCTACACTGGGCAGTATGTGAGATCCTTC
TAGACCTACATTTGTATGGTTTTGAAGCCTCGTAAATACCCACAGTAAGC
AATTATTTCTGGTGTAATCACCTATTTCTAAGGCTCACATTTACTTGAGA
CTTCCAGTGGAAAGAATAGTAGCTGCTTCTGGTTGGAAAGAATGCCAAAG
TACAGGGCAGGCTCAGGACAGAGATCATGGCAGTGTGGGCGCCCTCAGGT
GTACATGTCCTTGACCACACTAGAACTAAGAAAGTACTCAGTAAATACTC
ACTGAGGATTTGTGTTAAAAAATGACAGCTAAATAGGGGAATGCCTCCTG
ACAGCATTGTTCATCTGTGCGCCCCCACCTTTTGTTCCAATTACCAAAGT
GACACTAGAAGCCAAGGGATGACCTCTGTTCTATCTATGGAATGATAAAT
GTCATAGCTGCAAATTTGTCTTTTGTTTAAATTTCAAAAAAGCCTGTGCT
CATCCATTGATTTTTGTGGGATTTGGGATTTGGTGCACTGATGTTTTCAC
TAGAAAGCACAGAGTTGGGGTGAACTAAAAATAGTAGAATTGCATCAGGC
TTGTAAGACTCAAGGGGGTTATATTCATTAACATATTCGCCAGATGTGAA
GCATAAAACTAAGAATCAATAGCTCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAAAAATTTTGGAGGTTTTTTCT
CACACAATGCATTGTCATGGCTATTATTATTATCATTATTATTTATTATT
GTTATTATTAGTTTACATCATAGCTACTTTTTTATATATTATGGCTTCTT
TTAATGGAATATTTTATGGATGCTTGTGTATCTGTCTATATGTGTATTGT
TTGACTTTTATTTTTCCTTCTGTTTGTTGGTTTTGTTATATTCTGGTTTC
TTTATTTTCACTTATACTTCTCCTTCTCATAATCATCATCATTTAAATGT
TTCTTTGAACTCTAATGAGAGAGAGTATGAACGTATGTGTATTTAGGTGG
GTAGGAGACAAGGAGTTTTTCCCCCCCCCCCGGGGNNNNNNANNNGNNNN
TNTNNCTNTNNCTCTCNTCCCTCTTCACCCTTTGCCTCCTTCTCTTCCAC
CTCTTTTCCCCTCCCCCCCCATTTTCCCCTTTCTTACCCCCTTTTTCCTT
ACTCCCTTTCTGCCCCTTTCCTTTCTCTTTTTCTCCCCTTTTCCCCCCTT
TTTCCTTCCTCTCTCTTTTCCTTTTCCCCCCCCCTCCTTCTTTTTCCTTT
CATTTTCTCCCCCCCCACCTCCATTTTTTTTTTCTCCCCTTCTTTTCTCC
CTTCTCCCTCCATCTCTTTCCCCCTCCTCCTTTTCTTCCCTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_i22.b1 MSMg01no327_i22.b1 CHROMAT_FILE:
MSMg01no327_i22.b1 PHD_FILE: MSMg01no327_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:29 2005
         (376 letters)



>mm_chr9_17548567_17549342
          Length = 776

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/369 (97%), Gaps = 2/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtaagactctctcagtcctacactgggcagtatgtgagatccttctagaccta 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattctgtaagactctctcagtcctacactgggcagtgtgtgagatccttctagaccta 264

                                                                       
Query: 65  catttgtatggttttgaagcctcg-taaatacccacagtaagcaattatttctggtgtaa 123
           | ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct: 265 cctttgtatggttttgaagcc-cggtaaattcccacagtaagcaattatttctggtgtaa 323

                                                                       
Query: 124 tcacctatttctaaggctcacatttacttgagacttccagtggaaagaatagtagctgct 183
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| 
Sbjct: 324 tcacctatttctaaggctcacatttacttgagacttcgggtggaaagaatagtagctgca 383

                                                                       
Query: 184 tctggttggaaagaatgccaaagtacagggcaggctcaggacagagatcatggcagtgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctggttggaaagaatgccaaagtacagggcaggctcaggacagagatcatggcagtgtg 443

                                                                       
Query: 244 ggcgccctcaggtgtacatgtccttgaccacactagaactaagaaagtactcagtaaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggcgccctcaggtgtacatgtccttgaccacactagaactaagaaagtactcagtaaata 503

                                                                       
Query: 304 ctcactgaggatttgtgttaaaaaatgacagctaaataggggaatgcctcctgacagcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcactgaggatttgtgttaaaaaatgacagctaaataggggaatgcctcctgacagcat 563

                    
Query: 364 tgttcatct 372
           |||||||||
Sbjct: 564 tgttcatct 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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