BAC Information

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BAC

Clone NameMSMg01-327K07
Chromosome9 (Build37)
Map Location 113,129,618 - 113,129,963
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039341, LOC620760, LOC100043800, EG622110, LOC100039391, LOC100043801
Downstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327K07.T7 (MSMg01no327_k07.b1)MSMg01-327K07.TJ (MSMg01no327_k07.g1)
ACCAG444949AG444950
length744868
length of high quality
(start - end)
370 (48 - 417)129 (76 - 204)
definitionCHROMAT_FILE: MSMg01no327_k07.b1 PHD_FILE: MSMg01no327_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:35 2005CHROMAT_FILE: MSMg01no327_k07.g1 PHD_FILE: MSMg01no327_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAGTTCCCGGAGAGAGCAGTGTTGGGTAGCAGTGTCCTTTG
AATTGAAGAATCTAGTGCAGGAGAGAAGGCCCTAGCAACCCAGTCGATTC
TGTAGGTGGCTCACAAGGACTCAGGAAGTAAATGACTCAGAAGTGTCTGG
AAGTTCTGACCCTTACCAGATTCACAAGGTTCCCCATCTTTAAGATTCTA
TAAGCAAAGGGGGCAGCTGAGGAGAATGATTCCTGGACCTTTCGATTGCT
CTGCATGTTACAGAGATCCAGGGTCACAGCTTTCATTATCTATGTTACAG
TGGGGGTTCTGAGTGACGCATCTGTCTCTGTCAATCATGCTTCTGTTTGT
AACCTCGCACTGGTACTCCCCCACCTAACCTCAGTTAAGCTCATTGGTTC
ACTGGGTTGGAGTTTACTGGTATTCTTACATAGCTCTGTCATCAGTTCCC
TATCTGGGGTGAATAGATGTTTGTTCCTGCTCTTCAAGAATAGTGTCACA
TAAATAGTCTGCTAGAATTCTCCCTGGAGCAACATGGATCTTTTCCATCT
TGGGACCTCTGGCCAGGCGTCTCTCAGGAACACACACCTGACTTCTGTTT
TGTGAAAGTGGGTGTATTCTATACATAAAAACCCGCGTCAAGGATGGCTC
ACTTTAATCTCCTTAATGGGTTGGGTTTATTGCGCCTAGACCCT
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATGTGTATGTGTGGGTGTGTGTA
AGAAAGTATGAATGTGTGTATGCATGTATGTGAGTGTGTGAATGTGTGCA
TGAATTTGTGTGTGAAATTATGTGTATGTGTGAGTGTGAAAGTATATGAA
TGTGTTGGTTTACGATTTTATTCCCTTACATATTCTCCCTTCCACGTCCT
TGTCTACCCTTTTTTTCTCCTCCTTTTTTTCCCTACCCTCCTCTTTTCCT
CCTCCCCCGTGTACACCTTTTTTTTTTCACCTTTTCCTTTTTTCCTCCTC
TTCCTTTTTTTTATTTTTCCCCCCCCCCTCACTACTCTTAACCTTTATCT
CTGTCCTCTTTTGTTTTTTTCCCCCCCCCCTCTCCCACAAAAAAAAAAAA
AAAATTTTCCTTATTTATCCTCTCTTCTCTTTTTCCTTTTTTCTCTTTTT
TTCCCCTCCCCACCCTTACCCCTTTCCCCTCCCCTTTCCCTACTCCTACC
TTTTCCATCACTCTCCCTCTCTCCCCCCTTCCCTATCCTACCACTTAACA
TATCTATTATCCCATACCCCCCATTTTTTCTCCCTTTCTCTCCCTCTCCC
TTTTTTTCCCCTCTCCCCCCAATATACTATACTATTAACATATCTCTTCT
CCAAACATCCTTATTTCCATCTTTATTCTTTTCTATCCCATTACCCCTTT
CTATTATCATCAAACTTCACCCCCCTCCTTATTTTTTTTATTTTCTCCTT
CCTTCCCCCTAATCATTTTTTATTCTCTACTTATCCTACCTCATATACCT
CACTCCACTTTATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_k07.b1 MSMg01no327_k07.b1 CHROMAT_FILE:
MSMg01no327_k07.b1 PHD_FILE: MSMg01no327_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:35 2005
         (370 letters)



>mm_chr9_113129194_113129963
          Length = 770

 Score =  630 bits (326), Expect = 0.0
 Identities = 341/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 25  agagcagtgttgggtagcagtgtcctttgaattgaagaatctagtgcaggagagaaggcc 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 agagcagtgttgggtagcagtgtcctttgaattgaagaatctagtgcaggagagaaggcc 711

                                                                       
Query: 85  ctagcaacccagtcgattctgtaggtggctcacaaggactcaggaagtaaatgactcaga 144
           |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 710 ctagcaacccagtcaattctgtaggtggttcacaaggactcaggaagtaaataactcaga 651

                                                                       
Query: 145 agtgtctggaagttctgacccttaccagattcacaaggttccccatctttaagattctat 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agtgtctggaagttctgacccttaccagattcacaaggttccccatctttaagattctat 591

                                                                       
Query: 205 aagcaaagggggcagctgaggagaatgattcctggacctttcgattgctctgcatgttac 264
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 590 aagcaaagggggcagctgaggagaatgattcctggacctttcaattgctctgcatgttac 531

                                                                       
Query: 265 agagatccagggtcacagctttcattatctatgttacagtgggggttctgagtgacgcat 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 agagatccagggtcacagctttcattatctatgttacagtgggggttctgagtgacgcat 471

                                                         
Query: 325 ctgtctctgtcaatcatgcttctgtttgtaacctcgcactggtact 370
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 470 ctgtctctgtcaatcatgcttctgtttgtaacctcgaactggtact 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)