BAC Information

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BAC

Clone NameMSMg01-328H06
Chromosome9 (Build37)
Map Location 25,693,639 - 25,693,928
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328H06.T7 (MSMg01no328_h06.b1)MSMg01-328H06.TJ (MSMg01no328_h06.g1)
ACCAG445546AG445547
length797758
length of high quality
(start - end)
272 (45 - 316)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no328_h06.b1 PHD_FILE: MSMg01no328_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:36 2005CHROMAT_FILE: MSMg01no328_h06.g1 PHD_FILE: MSMg01no328_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTTCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCAAGGATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGTTCTGAAGTTCTCTATCTTTGTTGGGTCTT
TCTGTGGTTTAGGTATCATAGTAATAGTGTCTTCATAAAATGATTTGGCC
ATTAGTACCTTCTACTTCCAACCCCCCGAAATAGTTTGTGCATATTTGTA
ATTACATCTTTCTTTGAATTTCTGGTATAATTCTGGCTCTAATCCCATCC
TGGCCCTTGACATTTTTTTTGTTTTGCTTACACTATTAACTTACTGCTTA
CCATATCCTTTAACGTGTATCTGATTTTTGTTCTCTTTTTTCCTCTTTCT
TTTCCTCTTTATAATACTTTTCTTATCTTGATAATTCTGAACTTTACTCA
TTTTTTCTACACTTCTTTCCCTTCTCTCTCATTTTATTTTTTTTTTTTTA
TTTCTTTTTCCTTCTCACTCTTCTTTCTTTCTATTCCTCCATACATCCCT
CCCCACTTCTTAATATGTATAAACACCTTCTCCCCTCTCTTATTTCT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGCAGACCCAGTGATTTGTTGACAG
CTTAGACTGTGAGATTTTAATTGATGCTGATGATCTAACCTTTCATTGCT
TTCATAGCCATTATTTATAGGCTGTAAATTATTTGGAACTCTTTGAAGCA
GAAAAAATAAATTTGCTTCCAACAGCCAAGACTCATTTGCTGATATCCCA
AGGCTGATCATATGATTTGAGTTTATATTCCTAGAGCTGGGAAGGGAGCC
ATTTTCAGGACCAAGCTTCATCATGTAGCTTAATCCATACCTTAGCTGGA
AGGAGTATGACTAATACAAGAGAGAAGAAATGAGTCCATTGGATAGGACA
AAGGCTAAAGATAATAACCCCCCACGGTACTCACTTTCCTTTACAAACTG
ATTTAACTCATTCTTTTTAGCAATTGCGCAAAATTTTTCTTGTTTGAATT
TTTGTCACACATATTTCAAACCTAGGCTTCATGCTTTTACATTTGGCTTT
TGTTCTTTTATCTACACTTCTCATTTTCATATCCTGCATGCTATCCTTAC
CGTGTACTTACCCCATGTATCTCTGAATCTTTATCATTCTATTTTTCTCC
ATCCGATCGCCTTTTTTTTTCAAGATATCCTCCTTTTTACTTCTTTTTCC
TTCTACATTATTTCCTCTTTCTCCAGCTTTTTCTTTTCTTTCCCCTTTCC
ATATCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_h06.g1 MSMg01no328_h06.g1 CHROMAT_FILE:
MSMg01no328_h06.g1 PHD_FILE: MSMg01no328_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:36 2005
         (290 letters)



>mm_chr9_25693439_25694128
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcagacccagtgatttgttgacagcttagactgtgagattttaattgatgctgatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atgcagacccagtgatttgttgacagcttagactgtgagattttaattgatgctgatgat 431

                                                                       
Query: 61  ctaacctttcattgctttcatagccattatttataggctgtaaattatttggaactcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctaacctttcattgctttcatagccattatttataggctgtaaattatttggaactcttt 371

                                                                       
Query: 121 gaagcagaaaaaataaatttgcttccaacagccaagactcatttgctgatatcccaaggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 gaagcagaaaaaataaatttgcttccaacagccaagactcatttgctgatattccaaggc 311

                                                                       
Query: 181 tgatcatatgatttgagtttatattcctagagctgggaagggagccattttcaggaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgatcatatgatttgagtttatattcctagagctgggaagggagccattttcaggaccaa 251

                                                             
Query: 241 gcttcatcatgtagcttaatccataccttagctggaaggagtatgactaa 290
           |||||| || ||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 250 gcttcagcaagtagcttaatctataccttaactggaaggagtgtgactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)