TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTATACCAGCCTGGCCTCGAACTCAGAAATCCACCTGCCTC
TGCCTCCTGAGTGCTGGGATTAAAGGCGTGAGCCACCATGCCCGGCTACA
ATATTTTCTAAGAAGAATGTTTGTATGTGCTCTCCTTCCATGCTGTTGTT
TGTGATTGTTTATTATTTGTTTCTTGGGAAAAAGAATTCTAAAGTGAGCA
TACTAGTGGAAAACCACTGTCTGACAGGAACACAGAGTCTGTATTGCTCC
CGTCATTTTCTAATCACTGCTCGCCTACTGTTACAATGAACCAATTTCTA
TCGAAGACTGACTAGAAGCCCAGAAAGATAAACAACAGAAAACTTCGTAG
AAAGTGTAAAGCCTGCACGCTGACTGGATAATGGTTTGTAAAATGTCTCT
CTATCGATCAATCTACCCCTGTCTCTCTCAGCCTCCTTACATGTGTGGTC
TCTGTCTTTGTGCTGTACAGAAGACTTCAAATAGTTCAACGCAAAAAAGT
CTCTAAAACTGTCCTTGTGAAAAGCACTTCTGCTCAGTTATAATTATCGT
TTGGTATATGTCATAGCGATGAAACTGCTTAGTTTCTTTTAAAAGCGCAT
TAGAGGCAGAACACTTGATAATCTCACCGCTAGAGAAATGAGGCTTACAC
AGAAACTCAGGAGG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGCTCCTCCTGCACCATGCCTGCCTGGAT
GCTGCCATGTTCCCCCCTTGATGATAATGGACTGAACCTCTGAACCTGTA
AGCCAGCCCCAACTAAATGTGTTTTCTGAGAGTTGCCTTGGTCATGGTGT
CTGTTCACAGCAGTAAACCCCTAACTAAGATAGTGACCCTAGCAAGGACT
CACAGTAATGGAGGATACAGAGCCTGAACCAGCCATCTGTAACTAGGCAA
GGCTTGCAGTGGTGAGACTGGGACACCAATTCAGCCACAAACCTTCGACC
TGTTACAACCTGTCCTGCCTGAAAGATGTGCTGGGGCAATGGTGGCTCAG
AGCTTGTGGGACCGCCCAACTAATGGCTGGTCTAACTTGAGGCCCACACC
AGGTGAGGGAGCCCGTGCCCAAAACTGCCTGGACAGCCACGAACTGGAAG
CTGGATGGCCCAGATCTAGGGTAGAACCAAACATGACTGGCAAGAAAACA
AAACAAAAAAAACCAAACAAACAAACAAAAAAAGCAAGCCAGTGAAATGA
TTTCTAATGATATTCTGTTGTACTCACAGATCACAGCCCAACCTTTATCA
GAGAGACAAGAGGCTTTCTCTGGCAGCTGATGGGGGCAGATGCAGATACC
GGGACCCACAGCCTAACTTTATGCAG

Query= MSMg01no328_k20.b1 MSMg01no328_k20.b1 CHROMAT_FILE:
MSMg01no328_k20.b1 PHD_FILE: MSMg01no328_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:53 2005
         (647 letters)



>mm_chr9_75610199_75611238
          Length = 1040

 Score = 1098 bits (568), Expect = 0.0
 Identities = 624/648 (96%), Gaps = 15/648 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtataccagcctggcctcgaactcagaaatccacctgcctctgcctcc 63
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ggaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcc 893

                                                                       
Query: 64  tgagtgctgggattaaaggcgtgagccaccatgcccggctacaatattttctaagaagaa 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 892 tgagtgctgggattaaaggcgtgcgccaccatgcccggctacaatattttctaagaagaa 833

                                                                       
Query: 124 tgtttgtatgtgctctccttccatgctgttgtttgtgattgtttattatttgtttcttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tgtttgtatgtgctctccttccatgctgttgtttgtgattgtttattatttgtttcttgg 773

                                                                       
Query: 184 gaaaaagaattctaaagtgagcatactagtggaaaaccactgtctgacaggaacacagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 772 gaaaaagaattctaaagtgagcatactagtggaaaaccactgtctgacagga--acagag 715

                                                                       
Query: 244 tctgtattgctcccgtcattttctaatcactgctcgcctactgttacaatgaaccaattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 714 tctgtattgctcccgtcattttctaatcactgctcgcctactgttacaacgaaccaattt 655

                                                                       
Query: 304 ctatcgaagactgactagaagcccagaaagataaacaacagaaaacttcgtagaaagtgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctatcgaagactgactagaagcccagaaagataaacaacagaaaacttcgtagaaagtgt 595

                                                                       
Query: 364 aaagcctgcacgctgactggataatggtttgtaaaatgtctctctatcgatcaatctacc 423
           |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 594 aaagcctgcacgttaactggataatggtttgtaaaatgtctctctatcgatcaatc-a-- 538

                                                                       
Query: 424 cctgtctctctcagcctccttacatgtgt--ggtctctgtctttgtgctgtacagaagac 481
              ||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||
Sbjct: 537 ---gtctctctcagcctcctt--atgtgtgaggtctctgtctttgtgctgtacagaagac 483

                                                                       
Query: 482 ttcaaatagttcaacgcaaaaaagtctctaaaactgtccttgtgaaaagcacttctgctc 541
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttcaaatagttcaacac-aaaaagtctctaaaactgtccttgtgaaaagcacttctgctc 424

                                                                       
Query: 542 agttataattatcgtttggtatatgtcatagcgatgaaactgctt--agtttcttttaaa 599
           ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 423 agttataattatcatttggtatatgtcatagcgatgaaactgcttacagtttcttttaaa 364

                                                           
Query: 600 agcgcattagaggcagaacacttgataatctcaccgctagagaaatga 647
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 363 agcgcattagaggcagaacacttgataatctcacctctagagaaatga 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1040
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1030
Effective search space:   656110
Effective search space used:   656110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)