BAC Information

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BAC

Clone NameMSMg01-329A11
Chromosome9 (Build37)
Map Location 13,691,192 - 13,691,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
Downstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329A11.T7 (MSMg01no329_a11.b1)MSMg01-329A11.TJ (MSMg01no329_a11.g1)
ACCAG445970AG445971
length748735
length of high quality
(start - end)
334 (48 - 381)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no329_a11.b1 PHD_FILE: MSMg01no329_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:20 2005CHROMAT_FILE: MSMg01no329_a11.g1 PHD_FILE: MSMg01no329_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAAATCCGC
GGAATTCTTTGTTTATCTCTATATCCATTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCAGCTTCTTGAGTTCTTTTTATATATTCGATATTAGTCCCC
TCTCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGACTT
TTTGTCTTGTTGATAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTTGATTCTCAATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTCTTACCCTGTGCCCATATCTTCAAGGCTTTCCCTCACT
TTCTCCTCTATAACTGTCAGTTTCTCTGGCTTTACCTGGAATTCCTTGAT
CCACTTACACTTGAGCTTTGCACCCCCTGATAAGAATGCCTCGATTTGCA
TTCTTCTGCTCTCTCTCCGTCTGTTGAGACTGTTTCATCTGCCGACACTG
AGGCTCCTCTTTGAGCGGTTGGTTTTGGGGCGGGTGGGGGTCGGGGGCTG
GGTGTTAGTGAGGGGACAATTTTCTTCCTCCTCTTTCTTGTCTTTTTGAA
TTTTATGCCTTGTTTTTATTTTTATTTCTCTTGTTTGTTTCTCTTTCTGT
GGGGCCTTTTTTCCCTTCTTTTTTTTAGTCTCTTGTTGTACTGCCTCTTT
TCTCTACACGTGCTTATCTCCACATATTATTTTCCACATTCACCCCTG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATGGAGAGATGAATACACCAACCTA
TCCACAAAACCTTTGACTCGCAATTTGTCCTGCCCACAAGATGTCAGGGA
TAAGGATGGAGCAGAAATTGAGAGAATGGCCAGGCAGTTACAGGTCCAGG
TCACTGGGCTGGGAAAATGGTTCAGTCAGGAAAATGCTTGTTTTGCAAGC
ACAAGGCCCTAAGCCCATCCCAGAACGTACATTTTATAAAACACTCAGAC
TGGCACCCTGGAGCTAAGGCTGCCACACAGCCCTCTGCAGGCAAGTCTCC
ACCAGGAGAGAGGGGGCTCACTCTTAACCTCAGAGTTGAGATCACCACTT
TCTCTCCAATAACTGTCCACCGCAGGGCCTGCCAGGAGTGCCAGGGCACA
GGAACAGCAGAGCAGCTGAGGACAGGATCCTCCTGGTCACCATCTGCATC
CAGGAGCTAAGGTTGCTCCACAACCCTCCACATACAAACCCCTCTCAAGA
GAGAGCTGATCTCTGCAGCAGTGCTGACATACCTAAAATCACTGACTTAC
AGGCCCATAGCACGGAAAAGCTCCAGTCATAGACTGCAAGACTCATTTTT
ACCATATATAACCAGATGGCCTAGAGGGAAGCACAAGAACCTTTACACTA
GAAAACCAAGGCTACCTGGTCCTCCTCTTTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_a11.g1 MSMg01no329_a11.g1 CHROMAT_FILE:
MSMg01no329_a11.g1 PHD_FILE: MSMg01no329_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:21 2005
         (344 letters)



>mm_chr9_13690783_13691526
          Length = 744

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  gatgaatacaccaacctatccacaaaacctttgactcgcaatttgtcctgcccacaagat 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gatgaatacaccaacctatccacaaaacctttgactcgcaatttgtcctgcccacaagat 685

                                                                       
Query: 70  gtcagggataaggatggagcagaaattgagagaatggccaggcagttacaggtccaggtc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtcagggataaggatggagcagaaattgagagaatggccaggcagttacaggtccaggtc 625

                                                                       
Query: 130 actgggctgggaaaatggttcagtcaggaaaatgcttgttttgcaagcacaaggccctaa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgggctgggaaaatggttcagtcaggaaaatgcttgttttgcaagcacaaggccctaa 565

                                                                       
Query: 190 gcccatcccagaacgtacattttataaaacactcagactggcaccctggagctaaggctg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcccatcccagaacgtacattttataaaacactcagactggcaccctggagctaaggctg 505

                                                                       
Query: 250 ccacacagccctctgcaggcaagtctccaccaggagagagggggctcactcttaacctca 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 ccacacagccctctgcaggcaagtctccaccaggagagagggggctcactcttaagctca 445

                                              
Query: 310 gagttgagatcaccactttctctccaataactgtc 344
           |||||||||||||||||||||||||||||||||||
Sbjct: 444 gagttgagatcaccactttctctccaataactgtc 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)