BAC Information

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BAC

Clone NameMSMg01-329J02
Chromosome9 (Build37)
Map Location 83,730,202 - 83,730,555
singlet/doubletsinglet
Overlap geneTtk
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4
Downstream geneEG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329J02.T7 (MSMg01no329_j02.b1)MSMg01-329J02.TJ (MSMg01no329_j02.g1)
ACCAG446368AG446369
length797770
length of high quality
(start - end)
246 (46 - 291)357 (76 - 432)
definitionCHROMAT_FILE: MSMg01no329_j02.b1 PHD_FILE: MSMg01no329_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:04 2005CHROMAT_FILE: MSMg01no329_j02.g1 PHD_FILE: MSMg01no329_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGCACTGCACAGATTTAAAACTGTTATTGCTAAAATGTTTATA
AGTTTGGGTCCAGTGGACTGGCTCAGCATGTGAAAGTTATTGCAGCACAA
ACTGGGCGACCTGAGTTCAAGTCCAAGGTCCCACATGAAGAAGGAGGAGA
GGAAGAAAAGCCACTGGACTCCCTCTTCTACTCACATACCATGTCATGCC
CAAACAAAAGAATTTAAAAGTGAATTTTACAGGGAGCTAAAAATTATTAA
CAAATTTGCCAAAACCCTATGCCACTGTTCAAATACGTTCTTACGTTCTC
AGACCAGTTTGCTTTTCAGCAGGTATACACATAGTAGGCCTAAGTTTATT
GTGGTTAATTTTCGTACTTCGCCCCACGAAAGACCTTTTTTTTTTGCTGA
CCCCCCCATGGCCTACTGCTTTACCTTCATCAACTTTTTTCCCTTGTGTC
CTACCGTTCCCCAGGTTCCTCCTTTTCGGCTACCAGCCTTTTTCCTTTTC
TCCCTTCTTCCTTAAAAATCCTTTCTCCCCTTCCCTATCTTTTTTTTGTG
CCCCCCTTTTTTTTTTTTTTTTTTTTCCCTTTTTCACCGCTTCCTTAGCT
TTCCCTCCCTCTTTTTTCCTTTAGCCCTATTTATCCCGCTTTTTTTGTTT
TTATTCCCGCCCCCCCTTTTTTTCCTTCACTTTCTTTCAGTCCAAAATAC
CCTTTCCCATTACAATTCACCGTTTCCCTAAAAAAAAAAGGAGAAAG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTGGAACTGGAGCTATGGATGGT
TGTGAGCCATCATGTAGGCGCTGAGAATGGAACCTGGGTCCTCTGCAAGA
GCATAAAAGTGCCCCACACTGCTGAGACCCCTCTCCAGTCCTCTGAAGTT
ATATTTAATCTTAACACCGAACACTGAACGTGAAGTATCTCCCTATTAGT
CTTGTAGCTGTCTTACCTCTGTTCTGGCTACAGGTCGGTTAGTCCCAAAT
AGGTGTTCATTTTCACCTCTCTGGTCTTTGTAAACGTCTCTCTTCATGGC
CTTCCCTGATAAACTTGTTTGAGAAAGTTACCTCCTGAGATGGGGGTGTG
TCTCCCATCTTCTTTTCCCGCATTGTTTGCACAGCCCCGGTTCACTTCCT
GCATCTGTGTATCTGTTCTTGATCTGCCCAGGAAGTGCAAGTGACTAGAA
TGTCCTTTTCATGAGGTCAGTTATCGGACTGTTATAGCCAGCGCTTGGGT
TGACTTCTGATATGACGTTGTTGAATGCAAGCCGAACGTATCTCTGCCAC
CTGTGTATTTCACCAGTTTTCTTATGACCTTAGTTTATTTCTCTTACGGC
AAGGATGATTTTTTGATTTCCCCTATATCCTTCCTCTAGTCATACATTAG
ACCCCTGTCTGCGCTTTCTTCCTTCTTCTTAGCTGTCGTCACACATTCCG
CTTCCACTTGATATCCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_j02.g1 MSMg01no329_j02.g1 CHROMAT_FILE:
MSMg01no329_j02.g1 PHD_FILE: MSMg01no329_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:04 2005
         (357 letters)



>mm_chr9_83730002_83730755
          Length = 754

 Score =  625 bits (323), Expect = 0.0
 Identities = 348/357 (97%), Gaps = 3/357 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctggaactggagctatggatggttgtgagccatcatgtaggcgctgagaatggaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctggaactggagctatggatggttgtgagccatcatgtaggcgctgagaatggaacct 260

                                                                       
Query: 61  gggtcctctgcaagagcataaaagtgccccacactgctgagacccctctccagtcctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcctctgcaagagcataaaagtgccccacactgctgagacccctctccagtcctctg 320

                                                                       
Query: 121 aagttatatttaatcttaacaccgaacactgaacgtgaagtatctccctattagtcttgt 180
           |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct: 321 aagttatatttaatcttaacacggaacactgaa-gtgaagtatctgcctattagtcttgt 379

                                                                       
Query: 181 agctgtcttacctctgttctggctacaggtcggttagtcccaaataggtgttcattttca 240
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 380 agctgtcttacctctgttctggctacaggtctgtgagtcccaaataggtgttcattttca 439

                                                                       
Query: 241 cctctctggtctttgtaaacgtctctcttcatggccttccctgataaacttgtttgagaa 300
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 440 cctctctggtctttgtaaacgtctct--tcatggccttccctgataaacttgtttgagaa 497

                                                                    
Query: 301 agttacctcctgagatgggggtgtgtctcccatcttcttttcccgcattgtttgcac 357
           ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 498 agttacctcctgagatgggggtgtgtctcccatcttcttttcctgtattgtttgcac 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 754
Length adjustment: 9
Effective length of query: 348
Effective length of database: 745
Effective search space:   259260
Effective search space used:   259260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)