BAC Information

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BAC

Clone NameMSMg01-329O11
Chromosome9 (Build37)
Map Location 18,508,571 - 18,508,911
singlet/doubletsinglet
Overlap geneMuc16
Upstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
Downstream geneOlfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329O11.T7 (MSMg01no329_o11.b1)MSMg01-329O11.TJ (MSMg01no329_o11.g1)
ACCAG446600AG446601
length756734
length of high quality
(start - end)
351 (72 - 422)344 (80 - 423)
definitionCHROMAT_FILE: MSMg01no329_o11.b1 PHD_FILE: MSMg01no329_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:31 2005CHROMAT_FILE: MSMg01no329_o11.g1 PHD_FILE: MSMg01no329_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGTACCCATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGAC
AGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATCCACCCAANCCAGAAGCTTGAAGGAACCCA
GATGCCCCTCATCAGAGGATTGTATACAGAATATGTGTGACATCTACACA
AACGAGTACTACTCTTCTATTATTAAGAATGAATTTATGACATTCCTATT
CAAATGGATGGACCTGTGAGGTCCTCTCCTTGAGGGTGGTTACCCCATCT
TTCCAAGGATTTCACTCGTTATCGTAGTTCACTGGATATGCGTATATTTA
TGCCCAGATCCCTAGGGTTCTTCCGAGGAATTTAATAAAATACATTTTCC
TTATCCTCCTTGCTCGTTCCCTGGGACCAAATTTGTTTAAAGGATCCGCC
GCGTTN
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGATTCCCTCCGGTTTGTA
TAGCCACTGTGTCTTACAATATGATGTTTCCTTGTCTAAATAATGGTCCT
TGCAACAGAGTGAACCACTTGAAGACAAGTACTGCTCTCAATTGAATTTC
TCAGAAAGAAAAAAAAAGAAGGGAGGTAACAGAAAAATAGGCACCATTAC
ACTCATGTTAAAGATTCTACAAGGCCAAATGACTGAACATCAAGGGAATA
AAGAGTTGAAATGTAGACCAGTGCTAATTTGTTTAGGACTATTTTTTTAA
TCTTTCTGAAAGTCATCTATTATCCACATCTGTATCTAACCTATGTCCAT
TGGCACTATCAAAATCTAACACCCCCCCCCCGTGACATACCATTAGCTTC
CACTAATCCAAAAGCTAACAATGTGATCAGACATCTGGAAACTACAGCAG
AGTTTCCCCCCACTTGCTGTAACCACCTACCTGTGTGTCACCCTGTAAAA
ATATTTTAGAAATACTGTAATTCTGTAACTGATGTGCTGAATTTCAAGAA
CATCCTATGATACTTACCATGTTTGAAGCCCGAATGTGCTGTGCGAAATC
CTTTTCTCTGATGTGTAACGATGAGAATACTAAGAATGCCTATAAAATTT
GATAATTTCAATATCCTAGTTCATATATTTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_o11.g1 MSMg01no329_o11.g1 CHROMAT_FILE:
MSMg01no329_o11.g1 PHD_FILE: MSMg01no329_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:31 2005
         (344 letters)



>mm_chr9_18508371_18509113
          Length = 743

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgattccctccggtttgtatagccactgtgtcttacaatatgatgtttccttgtctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttgattccctccggtttgtatagccactgtgtcttacaatatgatgtttccttgtctaa 482

                                                                       
Query: 61  ataatggtccttgcaacagagtgaaccacttgaagacaagtactgctctcaattgaattt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ataatggtccttgaaacagagtgaaccacttgaagacaagtactgctctcaattgaattt 422

                                                                       
Query: 121 ctcagaaagaaaaaaaaagaagggaggtaacagaaaaataggcaccattacactcatgtt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 421 ctcagaaag-aaaaaaaagaagggaggtaacagaaaaataggcaccattgcactcatgtt 363

                                                                       
Query: 181 aaagattctacaaggccaaatgactgaacatcaagggaataaagagttgaaatgtagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaagattctacaaggccaaatgactgaacatcaagggaataaagagttgaaatgtagacc 303

                                                                       
Query: 241 agtgctaatttgtttaggactatttttttaatctttctgaaagtcatctattatccacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agtgctaatttgtttaggactatttttttaatctttctgaaagtcatctattatccacat 243

                                                     
Query: 301 ctgtatctaacctatgtccattggcactatcaaaatctaaca 342
           |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 242 ctgtatctaacctatgtccattgggactaccaaaatctaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)