BAC Information

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BAC

Clone NameMSMg01-330K14
Chromosome9 (Build37)
Map Location 98,182,878 - 98,183,189
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim42, Clstn2
Downstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K14.T7 (MSMg01no330_k14.b1)MSMg01-330K14.TJ (MSMg01no330_k14.g1)
ACCAG447157AG447158
length748745
length of high quality
(start - end)
320 (46 - 365)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no330_k14.b1 PHD_FILE: MSMg01no330_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:25 2005CHROMAT_FILE: MSMg01no330_k14.g1 PHD_FILE: MSMg01no330_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAGTAAGCACAAGGCATCATAATAATACCCGATGACGTGTGTC
TATGTATTTAACAGTTCAAACCATGCTGTCCGCAAACTGTGTAATCTGCT
TTTTCTCCTAAAGCATTGCATTTCATAGAGTCCCCTACATCGTTAGAAGC
TCCCCATGAACATTGTTTGCTCATTTAGAGCTTAAAAGACATCACCTTGC
CCTCCCTGTACCTCTTCTGGCTCCTGCCTCCCACCTGCTTTGGTTTATGG
GTTTCTCTTGGCTGAGCTGGAGGAGGGGCCATTGACAAGGTCTTTGGGGA
GCCCAATTATGTATTTTTTATGGACTCACCCCCCCCCGAGGGATTGCCAC
GCTCGCTGCCTGTTACGGAGCTGGCCAGACAAAGAATATCCAGAGTGCAG
GGACAATTTTGCTATTTGCTGGTATGGTTAATGAAAAGATGAAATTGGAG
CCTATGAGCACAACATGTAGGCAGCACCATAATTAGCCCTTTGGAAGGTG
AAGGATCCACTTTAAAATAAAAGAAAATAGCTTTGCACCCACGATGAAAT
GGTGGCAATTTTGCAGCTAATGTAGAGCCTGCATAGTTTCTGTAATTATG
TCCCCCAGGTCTTTTGTTCTCTGCAATTCCTTCTTTTCCTTTCCTCTTTT
TTCCTCCCTCTTCCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTTCTT
ACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAATTTGGGGGCCAAAAGTCTTA
AATGAAGGTAATAGTGCCCTTGCCCCCTCCAGTGGTATCTTAGTTAGGGT
TTCCTTTGCTGTGAACAAACACCATGACCAAGGCAACTCTTATAGAGGGC
AGCATTTAATTGGGGCTGGCTTACAGGTTCAATGGTTCAGTTCTTTATCA
TCACGGCAGGAAGCTTTGCAGCATCCAGGCAGACACAGTGCTGGAGAAAG
TGCTAAGAGTTTTACATCTTGATCTGAAGGCAGGCAGGAGAAGATTGACC
TCCAGGTAGCTATTTATTTTTGTCCCCCCGCCCCCCCACTAAGTGGCACG
CCTACTCCAACATTGCCACACCACCAAATAAAGAAAACATCTCTGGGTCA
AGCATATTCAAACCACCACAAGTGGGCTCCTGAGGTAATCTGTTCCATGC
CTCTCTTCTAGTTTCTGGGTTCTCTTCAGCTCATAGGATCCTCACTGCAT
TCTCTGTCTTATCTTCGATTCGTGGTTGGTGTTTGTTGCTTTGTTGTGCT
TTTTATTTCCTCTCTGCACATTTCTGGGACTATATCCCCTTCTCTTCTAC
TGTGAACTTGGGGACTCTTTCTAATCTGCAAGGTCATGTGCTGTACCATG
AGCCTTGATTGTCTCTACCACAATTCCCTTTTCAAATAAAGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k14.b1 MSMg01no330_k14.b1 CHROMAT_FILE:
MSMg01no330_k14.b1 PHD_FILE: MSMg01no330_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:25 2005
         (320 letters)



>mm_chr9_98182674_98183393
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtagtaagcacaaggcatcataataatacccgatgacgtgtgtctatgtattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctgtagtaagcacaaggcatcataataatacccgatgacgtgtgtctatgtattt 457

                                                                       
Query: 65  aacagttcaaaccatgctgtccgcaaactgtgtaatctgctttttctcctaaagcattgc 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 456 aacagttcaaaccatgctgtccacaaactgtgtaatctgctttttctcctaaagcattgc 397

                                                                       
Query: 125 atttcatagagtcccctacatcgttagaagctccccatgaacattgtttgctcatttaga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 396 atttcatagagtcccctacatcgttagaagctccccatgaacattgtttgatcatttaga 337

                                                                       
Query: 185 gcttaaaagacatcaccttgccctccctgtacctcttctggctcctgcctcccacctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcttaaaagacatcaccttgccctccctgtacctcttctggctcctgcctcccacctgct 277

                                                                       
Query: 245 ttggtttatgggtttctcttggctgagctggaggaggggccattgacaaggtctttgggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttggtttatgggtttctcttggctgagctggaggaggggccattgacaaggtctttgggg 217

                       
Query: 305 agcccaattatg 316
           ||||||||||||
Sbjct: 216 agcccaattatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)