BAC Information

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BAC

Clone NameMSMg01-330P06
Chromosome9 (Build37)
Map Location 123,413,609 - 123,413,802
singlet/doubletsinglet
Overlap geneLimd1
Upstream geneLOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2
Downstream geneSacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P06.T7 (MSMg01no330_p06.b1)MSMg01-330P06.TJ (MSMg01no330_p06.g1)
ACCAG447374AG447375
length735742
length of high quality
(start - end)
194 (128 - 321)235 (127 - 361)
definitionCHROMAT_FILE: MSMg01no330_p06.b1 PHD_FILE: MSMg01no330_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005CHROMAT_FILE: MSMg01no330_p06.g1 PHD_FILE: MSMg01no330_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTAACAGCACATATTTGGATAAAGCAAGACTGTCTCTAACTC
ATACCTGGAGGCAAGCTATTTCTCCCACCTGTTTAGAGAAAGGAGGCACG
AAGGGAGAAAGCCAGGAAACACCAGCCTGGAGAGCAGGGAAGCAGAGAAT
GCTTGATTCAGGCTCAGTCACTCCCTAGCGGGCAGGAAAAACAGACACAG
ACTCACCTAGACCATAGATGCTCATTGGCTAGAGCACAGAGCTACCACTA
GGTGGTGCTAAACCAAGGCAAGTTTTGGACAGACTGAGGCAATCCGTCCC
AATGAGAGTTTCAAATTGGCTCANGNGCTTAGCCCGTAGNATAGATTATC
TCATTAATCTTGCTATNNTGCAAAATTCCAATGNAACATTTGAGGGGAGG
GTTACTGCATCTTCACTAAGTCTGCCTTTGCTGATGGGTAAATACATACT
AAAGAAGTCAAACTTAAAGGCTGGAGTTGAAAATATTAGAGTTAAGAATC
AAATACAGGTCTTCCTTGGGCAAAGTCAACAGTCTCTTCACAATACACAA
TCTCTCCGTTTCTGTTCCATAAGATTGCTCTCTCAGAGAGTATGGAACAC
GGTGGAGGAGCAGGTAGCTACTGCCATGTGCGGTTATCAACACATGAATT
TAAAGTAACTTTAATGGTTCCAAGTATATTCCAAG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATTTGATTAAAATAATTTTAGGAA
GTTAGAAAAATTGATATTTTACCCAGAGTCAAGAGTAGACTGCCCCCTTC
TCATAGAATAGTAAGTAAAGGCTGCATGGAAAGGAATATGGTGAGCATTC
ATACACTACAAGAATGTAAATCATACTAGGAAGAGAAATAGGCTTGGGAC
AGATTTACGATCAAAGAAAAATATTCATTCTAGGTCGGGTCACAGGATGA
AGCCACAGGTGTTAACCATGATATGCTAGGCCATGGATGTACAGAATTAT
TGCTATGAACTTANATCGGTTTTCACCCCCCCCCCCGCTTTGAACTTATT
ATCAACATCCTGCTGTAACTTCCTATTGAAAAAAAAATTTTTCTTACGTA
GAGAACTTTTGTCTGAAAAGCTAAAAGCAAAAATAAAATTGTTAAAACCT
GCTCATTAGAGCTTTGCTCTATCCACCAACTCTAAGTATGTATATGTGCA
TACATGTCTGTCTGTCTGTATGAACGTAGATACTTTTTTGTACATATATA
TGAAATTGTTAGAACTTGCTTGTTGGAATTCACTTGTTAGAACCTGGTTT
TCCTCTTCCACTGTGAAGGTGGATATGACTTTCTCCCTTTTCTGTTCTTC
CCCACTGGCTTTGAAAAGATTTAATAAGCTTTGAGCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p06.b1 MSMg01no330_p06.b1 CHROMAT_FILE:
MSMg01no330_p06.b1 PHD_FILE: MSMg01no330_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:47 2005
         (194 letters)



>mm_chr9_123413409_123414002
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtttagagaaaggaggcacgaagggagaaagccaggaaacaccagcctggagagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cctgtttagagaaaggaggcacgaagggagaaagccaggaaacaccagcctggagagcag 335

                                                                       
Query: 61  ggaagcagagaatgcttgattcaggctcagtcactccctagcgggcaggaaaaacagaca 120
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 334 ggaagcagagaatgcttgattcaggctcagtcactccccagggggcaggaaaaacagaca 275

                                                                       
Query: 121 cagactcacctagaccatagatgctcattggctagagcacagagctaccactaggtggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagactcacctagaccatagatgctcattggctagagcacagagctaccactaggtggtg 215

                         
Query: 181 ctaaaccaaggcaa 194
           ||||||||||||||
Sbjct: 214 ctaaaccaaggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)