BAC Information

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BAC

Clone NameMSMg01-331A10
Chromosome9 (Build37)
Map Location 17,573,328 - 17,573,598
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710
Downstream geneLOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331A10.T7 (MSMg01no331_a10.b1)MSMg01-331A10.TJ (MSMg01no331_a10.g1)
ACCAG447429AG447430
length729731
length of high quality
(start - end)
684 (46 - 729)270 (147 - 416)
definitionCHROMAT_FILE: MSMg01no331_a10.b1 PHD_FILE: MSMg01no331_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:52 2005CHROMAT_FILE: MSMg01no331_a10.g1 PHD_FILE: MSMg01no331_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGATTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGAGAGGTAAAGATCCTAAGACCTCAGGTGAGTGGAACA
CAGCGCTGGCCCCAATCCAATCGCGCAGAACCTGAGACTGCGGTACATAG
GGAAGCAGAATACCCGGGCCTGACCTGGGGCACAAGTCCCTTCCACTCCA
CTCGAGCCCCGGGCTACTTTGCCAGCGGAATCGCCTGACACCCGCAAGGG
CCCACACAGGATTCCACAAGGGATCCTAAGACCTCTAGTGAGTGGAACAC
AACTTCTGCCAGGAGTCCGGCTCGAACACCAGATATCTGGGTACCTTCCC
TGCAAGAAGAGAGCTTTCCTGCAGAGAATACTTTGCCCACTGAAACTAAG
GAGAGTGCTACCCTCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACTTG
AAGAACAAGCTCTTAACAGAGACAACTAAAACAGCTAGCTTCAGAGATTA
CCAGATGGCGAAAGGCAACTGTAAGAATCCTACTAACAGAAATCAAGACC
ACTCACCATCATCAGAACGCAGCACTCCCACCCCACCTAGTCCTGGGCAC
CCCAATACAACCGAAAATCTAGACCCATA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCT
GAAAGATATTTATGAGGTGGTGAAATTCGAACAGATTTGTTTGTTTTATC
CATTTTCAAACCTGTAACTAAAGTAATATAAGTGTCTAAGCAAAATTTGT
ATAAAGATGTTTTGGGCCTATGCTGAATTGATTTCCCCTCATCTTTTAAA
CATCGTTTACATTTAAACTGAGGACCCAAAGCTCCCTTGGCCCAAAGAGT
CCAATGATTTTGCGCATTAACAAGAAGCAGTGTTAAATGTCGGCACAACT
CTCCCTTTTCCTCACACCCACTCATCTGTCATACCTAGAAAAGAAATACA
TCAGAAATCAAAGAGCAGACTGATGCCAAGGTTAAGAGTTGGGGAAGACA
AAATAACTACTGGTTCTTACAAACATAAGGCAGAAAAACAACCAAAACGA
GATTTCACAGTGAGGGTCTGACAGTTCTCACTCAGAAAAAGAGGCGTATA
ATCTGTTTTTCTGTGATACAGGCTGCCAAACATAGATTGACACGAAGTAT
TCTGATTCCGAACCTGCCATGTGAATACGGTTGGTAATCAGTTTCACAAA
TGTGACCTTCTCCTAGTTTGTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_a10.g1 MSMg01no331_a10.g1 CHROMAT_FILE:
MSMg01no331_a10.g1 PHD_FILE: MSMg01no331_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:52 2005
         (270 letters)



>mm_chr9_17573128_17573798
          Length = 671

 Score =  509 bits (263), Expect = e-149
 Identities = 269/271 (99%), Gaps = 1/271 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgaaag-atatttatgaggtggtgaaattcgaacagatttgtttgttttatccattt 59
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 471 ttctgaaagtatatttatgaggtggtgatattcgaacagatttgtttgttttatccattt 412

                                                                       
Query: 60  tcaaacctgtaactaaagtaatataagtgtctaagcaaaatttgtataaagatgttttgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcaaacctgtaactaaagtaatataagtgtctaagcaaaatttgtataaagatgttttgg 352

                                                                       
Query: 120 gcctatgctgaattgatttcccctcatcttttaaacatcgtttacatttaaactgaggac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gcctatgctgaattgatttcccctcatcttttaaacatcgtttacatttaaactgaggac 292

                                                                       
Query: 180 ccaaagctcccttggcccaaagagtccaatgattttgcgcattaacaagaagcagtgtta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ccaaagctcccttggcccaaagagtccaatgattttgcgcattaacaagaagcagtgtta 232

                                          
Query: 240 aatgtcggcacaactctcccttttcctcaca 270
           |||||||||||||||||||||||||||||||
Sbjct: 231 aatgtcggcacaactctcccttttcctcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space:   172782
Effective search space used:   172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)