BAC Information

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BAC

Clone NameMSMg01-331A18
Chromosome9 (Build37)
Map Location 52,175,274 - 52,175,691
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
Downstream geneLOC100042876, AI593442, Gm1715, Ddx10, Exph5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331A18.T7 (MSMg01no331_a18.b1)MSMg01-331A18.TJ (MSMg01no331_a18.g1)
ACCAG447445AG447446
length732882
length of high quality
(start - end)
417 (66 - 482)75 (66 - 140)
definitionCHROMAT_FILE: MSMg01no331_a18.b1 PHD_FILE: MSMg01no331_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:53 2005CHROMAT_FILE: MSMg01no331_a18.g1 PHD_FILE: MSMg01no331_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGAGCGCGGAATT
CACAGAGCATGCCCAACAATAGCACTGAATCCTGGGACCACACTGGCAAG
ACTTGTGTAGTTTTTTTTTCATTGATGTATTTTAAGACATCATCCAACTG
AGGAGAACAGAGCATCTCCAGGCTTATCATTCACATAGTCAAGAGGATTG
ACAGGCAGCGTGTACAGCCAACACCAAGGTTGGGCCGATATTGGAAGCAC
AGAAGCACTGTAGCAGGAAACTAATGCTGGTTTAAAGCTCCTATTGGAAG
GATCTGGAACCCAAGAAACAGCATGATCCTTTTCTGGTAAGAGAACTGGA
CCACTTAGCATGGAGGAGATTTGCACAGTGGAAGTGTGTTACCCACCCAT
CCTTCATCTCAGAGTAGCTGCCCTCCATATCAACAACACTGGAATCCCTG
TCACTGAACACTAAGGTATAAACAGAAGGATTATCAAGAGAAAGATTGGA
ACTAAGTATGACAAAGTATGTTAGTCATGGGCATGTGGCCCCTAGCCTTA
GACACATCCCTGCATTCGATGCATTTTAGTAGGAACTGGGGAATGACCAT
TTGGGCATGCAGAAAAAGTTCCCTATGTGAAAGATGGAAGAGCTGACTAA
ATTTACATTCCTTTCAACTCGGAGACATTGTGAATCCACACCTCATCTTC
CCCCTAATAGTTTTCCTTTGGCCTATTGCTCN
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTCGTGGATTTCCCGAGCTCCATCCACTGTTTGGCTCTGTGGGT
GTCTGTATCTGTCTGACTCAGCTGAGGCAGATGGAGGGAGGGATATGGTA
AGGAGGCGGATGTCCCCCTTTTTCTCTCTTCCCCCTCTCTCCTCCCTTTC
CCCCCCTTCCCCCCTTCCCCCCCTCCCCCTCCCTTTTCCCCCTCTTTCTT
CTCCCCTCTTCCCCCCCCCCCTTTTCCCCCCTCTTTTCCCCCTCCCTTTC
CTTCCCCTTTTCCCTCTCCTCCTTCCTTTTTTTTTTTTCCCTCCTCTTTT
TTTCCTTTCCCCCCCTCTTTTCTTTCCTCCTTCTCCCCTCTTCCTTCCCC
TCTTTTTCCTCTTTTTCTTCTCTTTTCTCCCCTTTTTCTCTCCCCCCCCC
CCCTCTTTTTTTCCCCTCCTTCTTTCCCCCCCTCCTTTTCTCCCCTTTTT
CCTTCCCTTTCTTCTTCCTTTCTCCCTTCTTCCTCTCCTTTTCCCTCCCC
CCCCTTCCCCCCTTCCCTTTTCTTTTCTTTTCCCCTCTCTCTTTTCTCCT
CCTTCTTCTCTCTTCCTCCCCTCTTCCTTTCTCCCTTCCCCTCCCCCTTT
TTCTCTCCCTTTTCCCTTCTTTTTTCCCTTTCCCTCTTTCCCTTTCTCCC
CCTTTCCTTTCCTCCTTTTTTTTTCTTCCTTCTCCCCCGCTCTCTCTCCC
TCCTTCCCCCTCTTTTCTCTCTCTCCCCTTTCCCCCTCCTTTCCTTTCTC
CCCTCTCCCTTCTTCTCCTCCTTCCCTTCTCTCTCCTTCCTTTCTTCTCC
TTCTCCTCCCCCCTCCTCCCCCTTCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_a18.b1 MSMg01no331_a18.b1 CHROMAT_FILE:
MSMg01no331_a18.b1 PHD_FILE: MSMg01no331_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:53 2005
         (417 letters)



>mm_chr9_52175074_52175891
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%), Gaps = 1/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatagcactgaatcctgggaccacactggcaagacttgtgtag-tttttttttcattg 59
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 acaatagcactgaatcctgggaccacactggcaagacttgtgtagttttttttttcattg 559

                                                                       
Query: 60  atgtattttaagacatcatccaactgaggagaacagagcatctccaggcttatcattcac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atgtattttaagacatcatccaactgaggagaacagagcatctccaggcttatcattcac 499

                                                                       
Query: 120 atagtcaagaggattgacaggcagcgtgtacagccaacaccaaggttgggccgatattgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atagtcaagaggattgacaggcagcgtgtacagccaacaccaaggttgggccgatattgg 439

                                                                       
Query: 180 aagcacagaagcactgtagcaggaaactaatgctggtttaaagctcctattggaaggatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagcacagaagcactgtagcaggaaactaatgctggtttaaagctcctattggaaggatc 379

                                                                       
Query: 240 tggaacccaagaaacagcatgatccttttctggtaagagaactggaccacttagcatgga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tggaacccaagaaacagcatgatccttttctggtaagagaactggaccacttagcatgga 319

                                                                       
Query: 300 ggagatttgcacagtggaagtgtgttacccacccatccttcatctcagagtagctgccct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggagatttgcacagtggaagtgtgttacccacccatccttcatctcagagtagctgccct 259

                                                                     
Query: 360 ccatatcaacaacactggaatccctgtcactgaacactaaggtataaacagaaggatt 417
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 258 ccatatcaacaacactggaatccctgtcactgaacacaaaggtataaacagaaggatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space:   330072
Effective search space used:   330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)