BAC Information

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BAC

Clone NameMSMg01-331A21
Chromosome9 (Build37)
Map Location 118,104,387 - 118,104,918
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331A21.T7 (MSMg01no331_a21.b1)MSMg01-331A21.TJ (MSMg01no331_a21.g1)
ACCAG447451AG447452
length836741
length of high quality
(start - end)
87 (64 - 150)532 (66 - 597)
definitionCHROMAT_FILE: MSMg01no331_a21.b1 PHD_FILE: MSMg01no331_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:54 2005CHROMAT_FILE: MSMg01no331_a21.g1 PHD_FILE: MSMg01no331_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGTGAGTCCGCGGAATTCCTGGC
TCCTCTCTCAGTACCAAATAAAACTGGGCGTGGTTGTGTGTGGATGAGGG
AGGAATAGCAGTTCACGGAGCTGGAGAGATGGCTCAGAGGTTAAGGTGGA
TGGTTAAGCGGCTAAGTGCCTGTTCCTTTCCACTATCTTTCCCTCTCTCC
CCAGCGTTCCCCTTTCTTCTCTCTGCTTATCTCCCTCTTTTCGTTTCCTT
CCTTTCGACTCTTCCTCTCCTCTTTCCTCGTCTCTTCTTTTTTACTCTTC
ACTTCCTTCCCTCCCCCGTTTTTTTTTTTTTTTATCATCCATTTTCCCTT
CCTTCCCCTCCCTTTTCTCTCCCCTCTCCTTTTGTCCTTTCCTGCTTCCT
CCCCTTTCCTCCTTCTTTTTCCCCCCCCCTCCTCCCATAATTATTTTAAT
ATTATTAACCTTTATTTCCTTCCCCCCCCTTTCCCCATTTCTCCTCCCCT
TTTTTTTCCCCTTTTTTCCCCTTTTTTCTCTTTTTTCCCCTCTTTTTTTC
CCTTTTATTTTTTCTCCTTCCCCTCTCTCCTTTTTTCTCCTCTTTTTTCC
CCTCCTTTTTCCCCTTTTTCCTTCTTCCCCCCTCTCTTTCCTTATTTTCC
TTCTTCCCTTTTTCCTTTTCTTTTTTTCCTTTCCCCTTTTTCTCTCCCTC
CCCTCCCCTCCTTCTCCTTCCCTTTCCCCCTTTATCCTATTCTCCCTTTC
TTCTCCTTTCCACCCCTTTTCTCCTCCTTTTCTTTATTCCTCCTCTTCTC
TCCTTTCCTCTCGCTCTTTTCTCCCCTCTTTCTTTG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGTCGAAATTCTGTAGTAAGCCCATTAACCTGTCATTCTGTGTTTG
TAATCAGCATCACACTCCTGAGCATATTTCAAGTTTTATTTTTAGTAATT
AGCCTGAATTATTTTCAAGTCAGTCTTAGGTACCATTTTTATTTCCCCTA
CATATACTTCAAAATAGATCTTTAATAGACAACTTTGGGGCTGAAGAGAT
GGCTCGGGGTTGAGATCATTCAGTGTTCTTGTGGAGAGCCAGATGTTGGT
TCCCAGCACTCATGTCAGGAAGCTCCAAACCACCTGCTGGGAACTCTAGC
TCCAGGGAATTTAACAAACTTCTGCCCTCCTTAAGTACCCACACAGAGAT
ATGCATACATATATGCACACACACATACACATAAATTTAAAGTAAAAGAT
AAAATATATAAGAGAATTTTTTATTAGTGTATATGATACAAAGTACTGAG
TTTCAGTTTTCATTGGCATTTTTATACCTGCGTGTAATGTCATCCTTCTG
TTATCATTTCTTTTATACCCACGTGTAATGTCACCTTTCGGTTACCACCT
CGTATCTCTAGTTTCTCTCTCATTATGACTTTCATGTCTCTAATATTCTT
CCTTTAACTTCCATAGCCTTTAGATTTTTCTTTTACATGTATTTAGTTAG
TTGACGTGTATAGTGGATAGAATGCATGTGGGAGCCAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_a21.g1 MSMg01no331_a21.g1 CHROMAT_FILE:
MSMg01no331_a21.g1 PHD_FILE: MSMg01no331_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:54 2005
         (532 letters)



>mm_chr9_118104187_118105118
          Length = 932

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagtaagcccattaacctgtcattctgtgtttgtaatcagcatcacactcctgagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagtaagcccattaacctgtcattctgtgtttgtaatcagcatcacactcctgagcat 260

                                                                       
Query: 61  atttcaagttttatttttagtaattagcctgaattattttcaagtcagtcttaggtacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcaagttttatttttagtaattagcctgaattattttcaagtcagtcttaggtacca 320

                                                                       
Query: 121 tttttatttcccctacatatacttcaaaatagatctttaatagacaactttggggctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttatttcccctacatatacttcaaaatagatctttaatagacaactttggggctgaa 380

                                                                       
Query: 181 gagatggctcggggttgagatcattcagtgttcttgtggagagccagatgttggttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatggctcggggttgagatcattcagtgttcttgtggagagccagatgttggttccca 440

                                                                       
Query: 241 gcactcatgtcaggaagctccaaaccacctgctgggaactctagctccagggaatttaac 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gcactcatgtcaggaagctccaaaccacgtgctgggaactctagctccagggaatttaac 500

                                                                       
Query: 301 aaacttctgccctccttaagtacccacacagagatatgcatacatatatgcacacacaca 360
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 aaacttctggcctccttaagtacccacacagagatatgcatacatatatgcagatacaca 560

                                                                       
Query: 361 tacacataaatttaaagtaaaagataaaatatataagagaattttttattagtgtatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacacataaatttaaagtaaaagataaaatatataagagaattttttattagtgtatatg 620

                                                                       
Query: 421 atacaaagtactgagtttcagttttcattggcatttttatacctgcgtgtaatgtcatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacaaagtactgagtttcagttttcattggcatttttatacctgcgtgtaatgtcatcc 680

                                                               
Query: 481 ttctgttatcatttcttttatacccacgtgtaatgtcacctttcggttacca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgttatcatttcttttatacccacgtgtaatgtcacctttcggttacca 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)