Query= MSMg01no331_l02.b1 MSMg01no331_l02.b1 CHROMAT_FILE:
MSMg01no331_l02.b1 PHD_FILE: MSMg01no331_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:38 2005
(519 letters)
>mm_chr9_74147060_74147978
Length = 919
Score = 735 bits (380), Expect = 0.0
Identities = 404/418 (96%), Gaps = 12/418 (2%)
Strand = Plus / Minus
Query: 114 tatttaaatatgagactgccagggttgagatacccagtcaagctaataaatcatatctat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tatttaaatatgagactgccagggttgagatacccagtcaagctaataaatcatatctat 860
Query: 174 atgaaaacaatccatcatctgtaactatatatattgcttgctctatctatctatctatct 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atgaaaacaatccatcatctgtaactatatatattgcttgctctatctatctatctatct 800
Query: 234 atctatctatctatctatctat--------ctatctatct---atctatc-atctatcta 281
|||||||||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct: 799 atctatctatctatctatctatctacctacctatctatctatcatctatctatctatcta 740
Query: 282 tctatctatctaatctatctttatatcatgtatatatgtatataatttcattctatcaga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctatctatctaatctatctttatatcatgtatatatgtatataatttcattctatcaga 680
Query: 342 ctagagaaccttgtctaatataacatctctatatacaggagttggaagatacagatcaaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctagagaaccttgtctaatataacatctctatatacaggagttggaagatacagatcaaa 620
Query: 402 tgttaccttttttttttttgaccatttcaattccccagtcatttaaaaatttccttcctc 461
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgttactttttttttttttgaccatttcaattccccagtcatttaaaaatttccttcctc 560
Query: 462 tgtagatataaaggaccttctttaaactcccgagttcactgtaatttgtagttttgtg 519
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tgtagatataaaggaccttctttaaactcccaagttcactgtaatttgtagttttgtg 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_l02.g1 MSMg01no331_l02.g1 CHROMAT_FILE:
MSMg01no331_l02.g1 PHD_FILE: MSMg01no331_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:38 2005
(342 letters)
>mm_chr9_73981282_73982023
Length = 742
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 1 gcaccctcttctggccccagagattctgcactcatgtgcacagatatggatgcatacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcaccctcttctggccccagagattctgcactcatgtgcacagatatggatgcatacatt 261
Query: 61 taattagaaataaaataaatcttaaattagaaaaaaaaaatctctccatgtttccctgtg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 262 taattagaaataaaataaatcttaaattagaaaaaaaaa-tctctccatgtttccctgtg 320
Query: 121 ggtcctcacactcgcctgtttattcttcctgtctgcaaggctaccctgccctgctctctg 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ggtcctcacactcgcctgtttattcttcctgtctgcaaggctgccctgccctgctctctg 380
Query: 181 cttttagttactatgtcttaatatgaactttctagtattttacccagaggtcatacagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttagttactatgtcttaatatgaactttctagtattttacccagaggtcatacagca 440
Query: 241 ttgttctttttaggtacctaatattttcaaataactagcttgaaattcatgtagtgtggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttgttctttttaggtacctaatattttcaaataactagcttgaaattcatgtagtatggg 500
Query: 301 tcaatgagttctttatttggttggagaatagtatcccattg 341
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcaatgagttctttatttggttggggaatagtatcccattg 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
