Query= MSMg01no332_b13.b1 MSMg01no332_b13.b1 CHROMAT_FILE:
MSMg01no332_b13.b1 PHD_FILE: MSMg01no332_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:11 2005
(499 letters)
>mm_chr9_51055400_51056298
Length = 899
Score = 911 bits (471), Expect = 0.0
Identities = 492/499 (98%)
Strand = Plus / Plus
Query: 1 ctggggaaacactgtgaagatagccaggtagagttcccagctatgagagtctcgaacaga 60
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctgggggaacactgtgaagatagccaggtagagttcccagctacgagagtctcgaacaga 260
Query: 61 gcaggtgtacccgtggatgaggcttccaaatacagcagaaatagcagcagaaagaactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggtgtacccgtggatgaggcttccaaatacagcagaaatagcagcagaaagaactta 320
Query: 121 catcatcaaatggggtgctcacagtatgaaacagaaactgacatgggaagttgaaaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcatcaaatggggtgctcacagtatgaaacagaaactgacatgggaagttgaaaaagt 380
Query: 181 catctggggtttctaattaagttttttctcctaatggatgacttctccatggctgaactt 240
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctggggtttctgattaagctttttctcctaatggatgacttctccatggctgaactt 440
Query: 241 ctgacctctctttccctccacaggcattgttatagcggtgtataaatagtggtaccctct 300
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 441 ctgacctctctttccctccacaggcattgttatagcgggggataaatagtggtaccctct 500
Query: 301 gttggaagtggtgtttaccttctagctgttctcaagggcacagtgtctttactcttgtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttggaagtggtgtttaccttctagctgttctcaagggcacagtgtctttactcttgtgg 560
Query: 361 gaatttgttgttctcttccctggcagagttagcagtaggcagcccatcccaagacaaggg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatttgttgttctcttccctggcagagttagcagtaggcagcccatcccaagacaaggg 620
Query: 421 ttcttagggaacacagtgacacgagcatacttaggtctgaaatggggaaggaaccaacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcttagggaacacagtgacacgagcatacttaggtctgaaatggggaaggaaccaacct 680
Query: 481 cacttctaaatccagcttc 499
|||||||||||||||||||
Sbjct: 681 cacttctaaatccagcttc 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_b13.g1 MSMg01no332_b13.g1 CHROMAT_FILE:
MSMg01no332_b13.g1 PHD_FILE: MSMg01no332_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:12 2005
(746 letters)
>mm_chr9_51213896_51215041
Length = 1146
Score = 1377 bits (712), Expect = 0.0
Identities = 736/746 (98%), Gaps = 4/746 (0%)
Strand = Plus / Minus
Query: 1 tatcaagaacacttaaaggatcttttccaaaattaacatacgcatagagtttgtttgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 tatcaagaacacttaaaggatcttttccaaaattaacatacgcatagagtttgtttgttt 964
Query: 61 gtttgtttgtttgtttttttgagggtgggagaaaaagaagaacgtctaaataattgtctt 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gtttgtttgtttg----tttgagggtgggagaaaaagaagaacgtctaaataattgtctt 908
Query: 121 ttcttatccttatatgatccaatatgaacaagtgtttgcaaaacgcttcttcttcagagg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ttcttatccttatatgatctaatatgaacaagtgtttgcaaaacgcttcttcttcagagg 848
Query: 181 tatgtgtcactcctccaagtcctcatgaaagaggaatctgaatgtgaaggaggagagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tatgtgtcactcctccaagtcctcatgaaagaggaatctgaatgtgaaggaggagagaaa 788
Query: 241 accttttatttattccaaatatttcagctaatgaaaatgtctatttgaactccctttcat 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 787 accttttatttattccaaatatttcagctaatgaaaatgtcaatttgaactccctttcat 728
Query: 301 caggagctctgcaccctgcctctctagcagaacccttggcacggacactcctggtgcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 caggagctctgcaccctgcctctctagcagaacccttggcacggacactcctggtgcctg 668
Query: 361 tgggactctatgaggtccactccctctccacgtttcttattaccagaaaccccatcaccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgggactctatgaggtccactccctctccacgtttcttattaccagaaaccccatcaccc 608
Query: 421 actgagacacagaagcctccttgctgcttacacttttattgtgtgtgctgctcacctcca 480
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 607 actgagacacagaggcctccttgctgcttacacttttattgtgtgtgctgcttacctcca 548
Query: 481 cacaccaaatattctccaggtccctctccctcactccagttcagccctccttctcttcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cacaccaaatattctccaggtccctctccctcactccagttcagccctccttctcttcag 488
Query: 541 gactctctcctcatccttctgtgtgactcttgacaagaatctgcatttgatgaatccgac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gactctctcctcatccttctgtgtgactcttgacaagaatctgcatttgatgaatccgac 428
Query: 601 agacccatggccttcctttgaagtctccacagcttaatcaagcatgtctaccccaagaca 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agacccgtggccttcctttgaagtctccacagcttaatcaagcatgtctaccccaagaca 368
Query: 661 cagagatgctcctttcaacctataggttttcagaaacttgttattgagagattcctttgc 720
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cagagatgcccctttcaacctataggttttcagaaacttgttattgagagattcctttgc 308
Query: 721 ataatgaggtgatggtggaaaataag 746
||||||||||||||||||||||||||
Sbjct: 307 ataatgaggtgatggtggaaaataag 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
