BAC Information

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BAC

Clone NameMSMg01-332C06
Chromosome9 (Build37)
Map Location 44,539,938 - 44,540,431
singlet/doubletsinglet
Overlap genePhldb1
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh
Downstream geneArcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332C06.T7 (MSMg01no332_c06.b1)MSMg01-332C06.TJ (MSMg01no332_c06.g1)
ACCAG448251AG448252
length1,2951,294
length of high quality
(start - end)
501 (147 - 647)274 (133 - 406)
definitionCHROMAT_FILE: MSMg01no332_c06.b1 PHD_FILE: MSMg01no332_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:17 2005CHROMAT_FILE: MSMg01no332_c06.g1 PHD_FILE: MSMg01no332_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCCCCNNNNCCCCACCATTGNNNAACATTGGNCGCAAGACTCACAA
GGGAGAGGATCCGCGGAATTCTGTTCCCAGNATCCACCTCTCACACTGAT
CCCTCATTTGNAANTCCTGTTTCAAGGATTCCCTTCACAATCTCCGGACT
CAGGGGGCTCCAGACACATACAGGATGCACAAACATACATGCAGGCAAAA
CACCATACAGATAAAATACAAATAAAAAAATTAAATTCAAGTGTATCTGA
AGATCTGGGAAGGACACTAAATCACATTCCATGAGCCACAAAGCAATCTC
AAAACAGCAGCTATGATTAGCTGTGGATGGCATTTGGGTCTATGCCTCAG
TTTCCCTATCTGCCATACTGTCACTGTCACCTGCGAAGCCCTTACTTATT
TACAGAGAATAAATTCAAGTAGAGATAAAGGCTGTAAAGAAATTAGGTTA
GCGAGGAAATAAGAGTGACTCAAGGAGAGGCTAGACAGGAATAAGGAGGT
GAAATGAGAGGCAGAGATAAGGAGAGAGGTGTAAAGAGAAGATAAGAAAC
CGCACAGCAATTGGAAGGTGGGAGGCTATGGCCTCAGCTCAGAAACCTAA
CCCACAGCAGAGGAAAAAGACACCAGACCAGCCTGACCTGGGCTCAGATG
GTGCTTTGATAGAGGGATCTCACCGTGGCCTAGGTGGCCTCTTCTCTGAC
CCTAATCCCATGTCCCTTGGAGAAGCAGTGCTGCCCCCCGACGCCCTCCA
CTGGCTGGCTTGCTATGGTCCCATTGAGTGGCTATCTATATCCAGGGCTT
TAATTACCCACTCAGCTATGCCCAGNTGCCAAAAAAAAAAAAAGCCCTTG
TGGTATGGCTTCCACTGCTGAAGAGAAGGCCTAGCCCTCTCTGTAACCCC
CTGCACCCCGATGCAGAAAGCTAACACCTCCCACCCACTAATCAAGAAAA
AAGGGCCGGCTGTGGCGGTTTTACACCTAAGGAAAGAAACCACAACATAA
GGAAGGGGGCGGACCAGGAACCCAACCCCACCTCCCGGGGTAAGGAAAAA
CACCCGCCCGGGGCTTAACCGGAAAAAGGGAAGGGATTGGGAAAACAACA
ACCCGACCCCGGAACTGAAAAAAACTGGGACCAGGGCCCAAAAAAGGCAA
ACCGTTTCGAAAAAAAAGCCCCCCCCCCCGGCCCAGAAAAAGGGGTTAGG
GAGAAAAAAAAAGCTCTGGCAAATATTTTTCCGTTATCCCCAAGCCCCNA
AAGAAAGAAAAAGGCGGAACAAAGAGGCGGGGGAAAAAAAAAAAA
NCCACTCTTTTTNAAAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAATCCCTTACTCAAAGCC
TTGGGCTCAATTCCCTGCATTGAATAAACCAGGCCTGTGGTCCATGGCCT
GTAATGTAGGCACTTGAGAGGTAGAGAGATCAGAAGTTTAAAGTCCTGCT
TGGCTACAACAAAGTTTGAGACCAACCTGGGATGCATGACTCAAAACATT
GAATTCAGCCAGGTGGGTGGCACTCTTGAGCCCGTGGCTCAAGGCTGAGG
GAGAAGGATCAAGAGCTGAAGGCCAGCTTAGGTTACCCAAGGGCTCAACG
CCAGTCTGAGCTACATGGTGAGACCCTTTTTCAGAGTGAAACTGTACGGT
TGGGCTAATATTGTAGCTTAGTGACAGTGCCTGCTTAGCAAACACAACCA
AGTTAGATCTCTAACACCAGAAAAAGAAATCCCAGTATTTGAAGAACAGT
AAAGACAAAATTATTAGAAGAAAGATTTTAACACGCTGGAATGGTGGTGC
ATGCCTCTTAGAAGACAGACATAAGTAGATCTCTGTGTTAAAGGCAGTCC
TGGTCTATAAATTAAATTCCAGGACAGCCAGGGCTACATAGGCACTGTTT
TTGTTTGTTTGGGGGTCTCGGTTTCTTGGGCTTTTTTTATTATTATTATT
ATATGTAAGTACACTGTAGCTGGGGAAGAGTGCTCTTACCCACTGAGCCA
TCTCACCAGCCCGGGCTTTTTTATTTAAAAAACAAAAAAAAAAAAGTAAC
AAGCGACACTGTGAGCAGGCAATTTCAGTTCTCTGTGACAAAAGCTAAGG
TAGACAGCAGAAGGTGCGTGGCCCTCGTCTCCCATTCTGTAAAAGAAAAA
CTGAGAGGAACAGTAACTTTCTGCGTGCCCCCCAGTTACATCACCATTGG
TCTTTCCGGAACACCTCCCACAACATATGTCTGTAAACCGCAAAGGCTGG
TTTGCTTTTGTTTTTTTTAACTGCCTTTTTTGGTTTTGCGAACTTTTATT
TTCCTTCTGGGCGATGAATGGTTTGCCCTTCGGTACTTTTGGGGCCCTAA
GGGGGCGCCCCAGGTCTTCAAGGTAGTCTCAATAAGACCTCCACGTTCTT
CTGAAATTAATCCTCAAAAAAGACCGGAATCCCTATTGTTTGGTTAAGGA
TCCCCTCTCCCGTGTCCCTCTATGAATCTCACTTGGGATCTTATCTCTAG
ACCTTCCTTCTTTTTCATGAAATCTTTCTTTCTTTACACATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_c06.b1 MSMg01no332_c06.b1 CHROMAT_FILE:
MSMg01no332_c06.b1 PHD_FILE: MSMg01no332_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:17 2005
         (501 letters)



>mm_chr9_44539731_44540631
          Length = 901

 Score =  878 bits (454), Expect = 0.0
 Identities = 484/496 (97%), Gaps = 5/496 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   gggctccagacacatacaggatgcacaaacatacatgcaggcaaaacaccatacagataa 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gggctccagacacatacaggatgcacaaacatacatgcaggcaaaacaccatacagataa 267

                                                                       
Query: 69  aatacaaataaaaaaatt---aaattcaagtgtatctgaagatctgggaaggacactaaa 125
           ||||||||||||||  ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatacaaataaaaa--tttttaaattcaagtgtatctgaagatctgggaaggacactaaa 325

                                                                       
Query: 126 tcacattccatgagccacaaagcaatctcaaaacagcagctatgattagctgtggatggc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcacattccatgagccacaaagcaatctcaaaacagcagctatgattagctgtggatggc 385

                                                                       
Query: 186 atttgggtctatgcctcagtttccctatctgccatactgtcactgtcacctgcgaagccc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atttgggtctatgcctcagtttccctatctgccatactgtcactgtcacctgcgaagccc 445

                                                                       
Query: 246 ttacttatttacagagaataaattcaagtagagataaaggctgtaaagaaattaggttag 305
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 446 ttacttatttacagagaataaattcaagtggagataaaggttgtaaagaaattaggttag 505

                                                                       
Query: 306 cgaggaaataagagtgactcaaggagaggctagacaggaataaggaggtgaaatgagagg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cgaggaaataagagtgactcaaggagaggctagacaggaataaggaggtgaaatgagagg 565

                                                                       
Query: 366 cagagataaggagagaggtgtaaagagaagataagaaaccgcacagcaattggaaggtgg 425
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 566 tggagataaggagagaggtgtaaagagaagataagaaaccgcacagcaattggaaggtac 625

                                                                       
Query: 426 gaggctatggcctcagctcagaaacctaacccacagcagaggaaaaagacaccagaccag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 626 gaggctatggcctcagctcagaaacctaacccacagcagaggaaaaagacaccagaccaa 685

                           
Query: 486 cctgacctgggctcag 501
           ||||||||||||||||
Sbjct: 686 cctgacctgggctcag 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)