BAC Information

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BAC

Clone NameMSMg01-332E21
Chromosome9 (Build37)
Map Location 56,850,762 - 56,851,177
singlet/doubletsinglet
Overlap genePtpn9
Upstream geneLOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn
Downstream gene2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E21.T7 (MSMg01no332_e21.b1)MSMg01-332E21.TJ (MSMg01no332_e21.g1)
ACCAG448373AG448374
length1,1881,196
length of high quality
(start - end)
534 (95 - 628)31 (1,079 - 1,109)
definitionCHROMAT_FILE: MSMg01no332_e21.b1 PHD_FILE: MSMg01no332_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:36 2005CHROMAT_FILE: MSMg01no332_e21.g1 PHD_FILE: MSMg01no332_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCGGTTTGTGNNTATCATTCGCGCTAAGACTCCTATGGGAGAGGAT
CCGCGGAATTCTTCACCTTTCCTTCCCTTTACATGAGTGTTCTAATAGGC
GATGTCTCGGAAAAGCCCCTATAAAACATCATGAATCATTTGGTCCTTGA
CGTCTGGTTCCTTCCAGGGGGACAGATGACATTTAGCACAGGACATGGAA
GTCTGTGGGAAAGGAAAGTTCTTAGCTACAAGAAAGGACAAACCTCTGAC
CTTGGGAAAAGGGCCAAAAATCTTTGAAGTCCTCATTACAGCAGTTAAAT
ATTTAACTTTAGCCAGGCGGTGCTAATACATGCCTTTAATCCCAGCTCTA
GGGAGGCAGAGGCAAGTGGATCTCTGTGAGTTCAAGGCCAACCTGGTCTA
CAAAACAAGTTCCAGGACAGCTGCTAGGGCTACACAGAGAAACCCTGAGT
CAAAATAACAACAACAACAACACATATTTAAAAGAATCTATTATGAAAAA
AAAACCCAAAGTATAAAATTAGAATTGATTTTTGAAAGCTATACTATGTT
GAGGGAACAAGGACAGCAGAGGGGTAAGATGTAGCTGCTAGAGTTTTCCA
GTATCATGGAGGATCCACAAAGATTAGCCACCAGAGGAATTGGATTTTAA
TAAGGCTTACAAGATCAGATTTTAGTTGTTGCACCCAGAGATTGAGTTAC
CGTTGTTTCTGAACTAAGTTTGTGTTGTGGTTTCCTTCACATGCTCATCT
GGGAGGGNTCAAGAGAGAAAGGTACGGCAGCAAAAAGTGGGTTTGTCCGA
AGTGCACCACCAAAGCTGTGGGGGATTTAAAAAAAGGGGCTGGGTTGGCA
AAGACCGGCCCCGGGGAAACCTAAGAACTGGGTGGAGTTGTTTCAGGAAT
TCCCCGCCCAAAAGCCTCCCCAGGGAAAAAAGGCATCCGGTGCTCCTCAA
AATGTGCGGCAGGCACCCAGGTTAAAAATGCTAGGGGGGAAAGCCCGGTT
TTTTTTGTTTTTGTTTTGGTTTGGGNNNNAAAAANCCCCCAACAAAAAAA
AAAAACCAGGGGGGGGGGGGGGCCTTTTTCCCCACCTTGGGGGTAAAGAG
GGGAATTTGAATTTTGAATNCGGGTTTAAAAATATTCAGAAAACAGGTTT
CAAAAAACTTGTTATAAATATGAAAAAAAAGGGATGGA
CGGGGGNNNNNNCCGATTGGAGCGGGGCCGCTGCCGTCGAATTCGGTGAA
CTATAGAAGGANGGGGGATCTGCAGGGTCCGNNNGNNNNGGNNNGGNNNN
NNNNNNGNCCTTAAAAGACNNNNNGNGNGNGGNNNNNGNNNNNGNNNNGN
NNNNNGNNNNGGNNNNNNNNNNGGNNNGGGGCCCCGGGNNNNNGGNNNGN
NNNNGNGNNNGNNNNGNNGNNNNNGGNNGNNGNNNNNNNNNNNNGNNGNN
NGGNNGGGNNNNNNNNNNNNNNNGNNNNNNNGGGNNNNNGNNNNNNNGGN
NNNNNNGNGGNNNNNNNNGGNGNNNNTTTTGNNNNGNNNNNNNNNNNNNG
NNNNNNNNNNNNNNNNNGNNNGGNNNNNNNGNNNNNNNGGNGNNNNNTGT
TGTGTTNNNNGNNNNNNNNNNGGGNNNNNNNNNNNGNGGNNNNNGAGNNN
NCNNNGNGNNNNNGNNNNNNGNNNGNNNGNGNNNNNNGNGNNNNNGGGGG
NGNNNNNNGGNGNNNNNGNNNNGNNNGGNGNNNNNNNNNNNNGNGGGGGG
NNNNGNNNGNNNNNNNNGGNNNGNNNNNGNNNGNGNNNNNNNNNNGNNNN
NGNGNGNNNGNGNNNNNNGNNNNNNGGGGGGNNGNGNNNNNGNNNNNGNN
NNNGNNGGNNGNNNNNNNNNNNNNNNNGNGGNNNNNNNNGNNNGNNNNGN
NNNNNNNNNGNGNGNNNNGNNNNNGNNGNNNNNNNNGGNNNGGGNGNNNN
GGGGGGGGNNNNNNNNGGNGGNGGNNNNNGNGGGGNNNNGGGGGGGNNNG
GNGGGNNNGGGGGGGGGGGGGGNNGNGGGGGGGNNGGGGGGGGGGNNGNN
NGNNGNGGGGGGGGGGGGGGGNGNGGGNNGGNGGGGNNNGGGGGGGGGGG
GGGNGGGGGNGNGGGNGGNGGGGGGNGGGGGGNGGGGNNGGGGGGGGGGG
GGGGGGGNGGGGNNGGGGGGGGNNGGGGNGGGGGGGGGGGGNNGGGGGGG
GGGGGGNGGGGGNNGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGG
NGNNGGGNGGGGGGGNGGGGNNGGGGGGGGGGGGGGGGGGGGGGNGGGGG
GGGGGGGGNGGGNNGGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGNGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e21.b1 MSMg01no332_e21.b1 CHROMAT_FILE:
MSMg01no332_e21.b1 PHD_FILE: MSMg01no332_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:36 2005
         (534 letters)



>mm_chr9_56850762_56851695
          Length = 934

 Score =  766 bits (396), Expect = 0.0
 Identities = 411/416 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggcgatgtctcggaaaagcccctataaaacatcatgaatcatttggtccttgacgtc 60
           ||||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||
Sbjct: 416 ataggcgatgtctcggaaaagcctcaatttaacatcatgaatcatttggtccttgacgtc 357

                                                                       
Query: 61  tggttccttccagggggacagatgacatttagcacaggacatggaagtctgtgggaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tggttccttccagggggacagatgacatttagcacaggacatggaagtctgtgggaaagg 297

                                                                       
Query: 121 aaagttcttagctacaagaaaggacaaacctctgaccttgggaaaagggccaaaaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaagttcttagctacaagaaaggacaaacctctgaccttgggaaaagggccaaaaatctt 237

                                                                       
Query: 181 tgaagtcctcattacagcagttaaatatttaactttagccaggcggtgctaatacatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgaagtcctcattacagcagttaaatatttaactttagccaggcggtgctaatacatgcc 177

                                                                       
Query: 241 tttaatcccagctctagggaggcagaggcaagtggatctctgtgagttcaaggccaacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tttaatcccagctctagggaggcagaggcaagtggatctctgtgagttcaaggccaacct 117

                                                                       
Query: 301 ggtctacaaaacaagttccaggacagctgctagggctacacagagaaaccctgagtcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ggtctacaaaacaagttccaggacagctgctagggctacacagagaaaccctgagtcaaa 57

                                                                   
Query: 361 ataacaacaacaacaacacatatttaaaagaatctattatgaaaaaaaaacccaaa 416
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 56  ataacaacaacaacaacagatatttaaaagaatctattatgaaaaaaaaacccaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)