BAC Information

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BAC

Clone NameMSMg01-332H05
Chromosome9 (Build37)
Map Location 116,278,069 - 116,278,751
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneRbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332H05.T7 (MSMg01no332_h05.b1)MSMg01-332H05.TJ (MSMg01no332_h05.g1)
ACCAG448482AG448483
length1,3141,311
length of high quality
(start - end)
639 (134 - 772)683 (140 - 822)
definitionCHROMAT_FILE: MSMg01no332_h05.b1 PHD_FILE: MSMg01no332_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:54 2005CHROMAT_FILE: MSMg01no332_h05.g1 PHD_FILE: MSMg01no332_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGATCATNNNNNNCCAATGGGCGCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCTCCATCCTACATTTGCCCTAACTAACCCCCTAGNACCTT
TTGTTGTTGTTGCTGCTCCTTAATTTTTATTCATTTATTTTGACAAAAGG
GACAGTCACTGGCCTGAAGTGATGCCTCAGCCCTTAACATCGCTGGCTTC
CTTTGCAGAGGACCTGGGTTCTATTCCCAGCACTCACATGGCTGCTCACA
ACCATCTGTGACTCCAGTCATAGAGGATCAGATGCTCTCTCCTGTCTTTC
ATGGCCACTGCACATAAATGCTGCATGAACACACATGCAGGCAAAACACT
CAGACATACAAATATATTTTAAAGGCCGGTGAAGGCTTTATCTCTGAGCA
TCATAGAATCAAAAACTTATAGCTACTGTCTAAAACAGTCTGTAGTATTT
CTTTTCTTGTTGACGTGACAAACATCTTTTAAAAGCCCACTGAAGGAATG
AAGAGCTTACCTTGGGACCTAGCAGGGAGGTGTGGTCCATTGTGGTAGGT
AGGCATGGCTATAAAGAGATGTTTCACTTGTGACAGGACTGTGAGCATCT
GGCCACAGTACCCCTGCAGTCAGAGGACAGGAGCAGGTGAATGTCCCTCA
ACTCAACATTTCTCTTTTATTAGCTTGGGGCTCTTGGCTATGGGGTGGTG
TCACTCACATTCAAAGCAGGTCTTTCCTTCTCAGTTAAGCCCCTCTGGGA
ATTCCATCACAGATGTATCCAGAGGTGTCTCCTAGGTGACACCAAACAAA
GTAAGTTGAAAATGAAGATGGACCCTCACAATCTCCAAATAAAACAATGA
GAACCCATTGATAGCCAAAGTCCACTGTTGGTCTGTCTGTCAAGAAACAT
GTCTTCTGACTTCCTTTAACAAAAACCAAAAGAAACACCTGAAAAAACAG
GGACGGCCTCCTAGAAAAAGGAGGGGGAGGCGAGAAGCTAAGGATAAATA
AAGGGTTTCCCCCAGAAGCCTTGTATTTTGAAAAGGTTCCAAACTTTGCA
AGGAACATCCCACCCCAGTTTGTAATAGAAAAAAACAAGTACACTTGGCT
GGGCCCCCAAAGCCCCTGGTTATGGAAAAAAAGTATTTTTACCCAAAATC
CCCCTAACCAAATTCTTTTTTTAGTATTTTGAGTCGAAACATCTCTCCCT
CANCAGGTTCCCTGTGTTGGCANGGGGGGATTAAATATAAAAAAGTATAT
CCCGCCTTTTTTCGTAAGACAATTAATTGGGTTTTCCACTTTGTGCTCAT
ATTTCTTTTATATA
CCCCGCTTTTNTNNAACCATGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAGTTCCCCAAGTGTAG
AGAACATCTCAGCCTGACACCCTTAAGCTTACCCCCGAGTGCTAACCATC
TGCCATCTTCCTATTGTGGGGAATGCTGAAGGAACTGTGAAGGATGTGGG
CCAGAGACAACCTTGTAGCCCAGGGGGATTAAAGCTTCTGTGCGTCACCT
CTTGTCTGTTTGGATGGATGGCAGAGAAACTGTTGTGCTTGCAGGTTTGT
TAACAGAGGTTAAACAGCACACTGTGGCAGATGGAGGGAGTGGCTTGTGG
ATAGCCCTCTTCCACTCCCTGTAAAAATCTACATAGATCTGAGATGAGAT
CACTTTGTTAATATCTTTCTTCAGTTGCCAAATTGTTGTGGTTTGAATAA
GAGATCCCCTTACAGGCTGAGGTATTTGAACACTCATCCTCAGGTGGGGG
CTGTGAGGAGGAGTGGTCCACCCCTGCTGGAGGAAGTACATCCCTGGGGA
CCAGCTGGCTACAAGGGTTCATAGTCTCCCTCGATTCCAGTTATCTCTGT
CTCTGTCTCTCTCTGTCTCTGCTCATTTTGTGGGGTTAAAGATGCAATCT
CTCAGCCTCTGGTTGCCATATCTCCTCCACCATATGGTCTCTGCCTCTAA
AACCAAACCACAGGCAGAAATAAACTTCCTTTAGTTGCCTTTGGTCATGG
TATTTTATGACAAATATGCAAATCCTTCTCTCTACTTTGCCTCTCTCTGT
TTCTTTCTCTGTCTCTCTGTCTCTCTCTGTCTGTCTATCTCTCTCTTCCC
CTCTCATGTTTAAAGACCAGTTAATAGAATCCCATAGCATCCAGAACATA
GAATTGTTCCGTAAACTTTTTAATTTAAGAATAAATGCAAATTTGATTTA
TTGAAAACCAAGTGTGCACTATACTCTGTTTTTTGAGGGGGCGGCTGAAT
ATGTGCTTATTGACCAAATGAATATCTAATCTGTGCCCCTAACTTAACTT
TACTTTCCTCAAAATTATTCCACTTCTTTCTCCCATCTTCTTGTTTGTGC
TTATTTTTATTCCATCCCGTTCTTCTATACAATTCTCTTTATTGCCTTAT
CCTTCCTACTCTCTTTCTACCTATCTTATATCTAACTCCACTTCATCTCC
TTCTTATTTTAACTTTCTTTCAATTCCATCTTTTTTACCTACTACACTCA
CTTTCTTCTCTTCTTTTCCGTTTTCCTTCTCTTCTTCTCTACCTCTCTGC
TCCCTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_h05.g1 MSMg01no332_h05.g1 CHROMAT_FILE:
MSMg01no332_h05.g1 PHD_FILE: MSMg01no332_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:54 2005
         (683 letters)



>mm_chr9_116277866_116278948
          Length = 1083

 Score = 1265 bits (654), Expect = 0.0
 Identities = 675/684 (98%), Gaps = 5/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   taaccatctgccatcttcctattgtggggaatgctgaaggaactgtgaaggatgtgggcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 taaccatctgccatcttcctattgtggggaatgctgaaggaactgtgaaggatgtgggcc 263

                                                                       
Query: 64  agagacaaccttgtagcccagggggattaaagcttctgtgcgtcacctcttgtctgtttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 agagacaaccttgtagcccagggggattaaagcttctgtgcgtcacctcctgtctgtttg 323

                                                                       
Query: 124 gatggatggcagagaaactgttgtgcttgcaggtttgttaacagaggttaaacagcacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatggatggcagagaaactgttgtgcttgcaggtttgttaacagaggttaaacagcacac 383

                                                                       
Query: 184 tgtggcagatggagggagtggcttgtggatagccctcttccactccctgtaaaaatctac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtggcagatggagggagtggcttgtggatagccctcttccactccctgtaaaaatctac 443

                                                                       
Query: 244 atagatctgagatgagatcactttgttaatatctttcttcagttgccaaattgttgtggt 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 atagatctgagatgagatcactttgttaagatctttcttcagttgccaaattgttgtggt 503

                                                                       
Query: 304 ttgaataagagatccccttacaggctgaggtatttgaacactcatcctcaggtgggggct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgaataagagatccccttacaggctgaggtatttgaacactcatcctcaggtgggggct 563

                                                                       
Query: 364 gtgaggaggagtggtccacccctgctggaggaagtacatccctggggaccagctggctac 423
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgaggaggagtggtccaccc-tgctggaggaagtacatccctggggaccagctggctac 622

                                                                       
Query: 424 aagggttcatagtctccctcgattccagttatctctgtctct----gtctctctctgtct 479
           |||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||
Sbjct: 623 aagggttcatagtctccctctattccagttatctctgtctctctctgtctctctctgtct 682

                                                                       
Query: 480 ctgctcattttgtggggttaaagatgcaatctctcagcctctggttgccatatctcctcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgctcattttgtggggttaaagatgcaatctctcagcctctggttgccatatctcctcc 742

                                                                       
Query: 540 accatatggtctctgcctctaaaaccaaaccacaggcagaaataaacttcctttagttgc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 accatatggtctctgcctctaaaaccaaaccacaggcagaaataaacttcctttagttgc 802

                                                                       
Query: 600 ctttggtcatggtattttatgacaaatatgcaaatccttctctctactttgcctctctct 659
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 803 ctttggtcatggtattttatgacaagtatgcaaatccttctctctactttgcctctctct 862

                                   
Query: 660 gtttctttctctgtctctctgtct 683
           ||||||||||||||||||||||||
Sbjct: 863 gtttctttctctgtctctctgtct 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)