BAC Information

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BAC

Clone NameMSMg01-333B13
Chromosome9 (Build37)
Map Location 63,874,083 - 63,874,253
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6
Downstream gene2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333B13.T7 (MSMg01no333_b13.b1)MSMg01-333B13.TJ (MSMg01no333_b13.g1)
ACCAG448946AG448947
length735773
length of high quality
(start - end)
340 (71 - 410)174 (68 - 241)
definitionCHROMAT_FILE: MSMg01no333_b13.b1 PHD_FILE: MSMg01no333_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:11 2005CHROMAT_FILE: MSMg01no333_b13.g1 PHD_FILE: MSMg01no333_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATAATTGCGGCGCTAAACGACTCCTANATTCCGACGGGCGCGGAATCA
GGTCGTTTGCTTAGAACATCAGTGCCTTTACCTGCTGTGCCATCTTGCTG
GTCCAAGCCAGCATTTTTTAGATCTTTGCTTTGAGACAGGGTTGAACCAT
GTAAGTAAGGCTGACCTCAAACTTGGGATCCTTTGTTTCTGACTCCCAGT
AGCTGGGATTATAGGTGTGCACCCGTGCCTGGTTTAGCTAGCTGAGATTA
GTTGGTGATTGCTCCCACTTTTACACATGGACACACTCATTACACTTGCC
ACTTCAGTTGGCTGATTAGTAGATGTGATAAAGTTTGGCTTTCTATGCAA
ATGTGACTTGTTCATTTAGGTGATTTCCAGGTTGTTGTTTTTTTTGTGTG
TGTGTGTGCCGCCCCCCTCAGAAAGGGTCACAGTCTGTAGACCCGAGTGG
CCTGGACTCATTCTGAAGACTGGGCTGATCTCTCCTCACAGAGGTTCACC
TACCTCTGCCTTCCTCGTGCTGGGAGTAAAGATGTATGCCATTGCCTCAG
TCAGGGTTACTATTGCTGTGATGAAACAGCATGACCAAAAGCAACTTGGA
GGGGAAACGGTTTATTTAACTTCCACTTCCTTACTCCAATCACTTAAGGA
AGTCAGGACAGGAACTCACACAGCGCGGTAACCTAGAGGTGGAAGCTGAT
GCAGAGGCCGTGGAGGAGTGCTGCTTACTGTTTGC
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTCAAAAATTCTGATACTGCTACAGACTCTTCCTTGTGGGGTCAGGG
GATGCCCGTATCCTCTAATGGAGCTCTGTGTTTATTGGTGTTTATTGAGC
TCCTGCTGAGTGCCCACCTCCTCCTCCCAGAGCTGGGGAACCTGCAATAA
GCCAAGTCCAGTAATTCCAGAGTTCATGGAATCTAGTGAGATTTATACAG
ACCACAACCAAAGGAGCAGGGTGCTCTGCACACTGAAAACGCCACGGCCA
AAGCGAATTTAATAGTATTACAGAGGAGTGTCAGGGGGCAGGGAGGCATA
TATTTTGGAACACTTCCCTGGGAAGGTGACATCGCAGTGAGGTAATGACA
TTTTCTCCCCCACATAATTGGATTGAGTTTTTGTTGTTGACCTCGACGTC
ATAGTGTTACCCGACGCTGCGCGTTTTCCCTCACATTCCGCTCGCACACC
GCTGTTTCCATGGATATTAGCGCACTCCCTATAGCCCCGAGGCTGATTCT
TGCCTGTAACGCATGCGTTTCTTATTATTTCCTCGGCCTTCTTTACAGGT
TCCCGAAGTCCTCTTTTTATACCCCAGTGCTTTATTGTCCCCTTCCTGTT
ATCTCCCCCCGTTGCCTTCTTCTTGTTTTCGCTCGTCCCACTGTTCACTT
CTGTGCTAGCCTATTTGAACGTTCCTCCGCACCCCGTGTTATTACCCTCG
TTTATCCCTCTCCTTATCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_b13.g1 MSMg01no333_b13.g1 CHROMAT_FILE:
MSMg01no333_b13.g1 PHD_FILE: MSMg01no333_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:11 2005
         (174 letters)



>mm_chr9_63873880_63874453
          Length = 574

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   tgctacagactcttccttgtggggtcaggggatgcccgtatcctctaatggagctctgtg 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 tgctacagactcttccttgtggggtcaggggatgcccgtatactctaatggagctctgtg 263

                                                                       
Query: 64  tttattggtgtttattgagctcctgctgagtgcccacctcctcctcccagagctggggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttattggtgtttattgagctcctgctgagtgcccacctcctcctcccagagctggggaa 323

                                                              
Query: 124 cctgcaataagccaagtccagtaattccagagttcatggaatctagtgaga 174
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgcaataagccaagtccagtaattccagagttcatggaatctagtgaga 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)