Query= MSMg01no333_e10.b1 MSMg01no333_e10.b1 CHROMAT_FILE:
MSMg01no333_e10.b1 PHD_FILE: MSMg01no333_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:25 2005
(568 letters)
>mm_chr9_74843281_74844245
Length = 965
Score = 1009 bits (522), Expect = 0.0
Identities = 553/564 (98%), Gaps = 5/564 (0%)
Strand = Plus / Plus
Query: 6 gaattctggatggatc-gcagcagaaggagactagaagcagagagcccagccatggaact 64
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctggatgga-caggagcagaaggagactagaagcagagagcccagccatggaact 264
Query: 65 gttgtagttactctggaagagattacaaccatagaagaacatgggaaagaaaacagctag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgtagttactctggaagagattacaaccatagaagaacatgggaaagaaaacagctag 324
Query: 125 agcttttggtcttggctccgtgagcatgtgcagggttagagtgtggagtgtaactacact 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcttttggtcttggctccttgagcatgtgcagggttagagtgtggagtgtaactacact 384
Query: 185 ctaggagggtaggagcaggagatagtggcagatgacactgggcttaatggattcagtgtg 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 ctaggagggtaggagcaggagatagtggcagatgacactgggctcaatggattcagtgtg 444
Query: 245 ggttttattttccctctgtctcttagtctttatgatttccttgctctccctatctttatc 304
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 ggttttattttccctctgtctcttagtctttat-a--tccttgctctccctatctttatc 501
Query: 305 taaatttcattatgtaacctgccacagaacagattctttttcatttgagtgaggccattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taaatttcattatgtaacctgccacagaacagattctttttcatttgagtgaggccattt 561
Query: 365 taatgcttcccacacgccatttctcatcattataacaactatacctagttggatggttaa 424
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 taatgctttccatacgtcatttctcatcattataacaactatacctagttggatggttaa 621
Query: 425 ctattaaaattaccagaaagtcaagataaccatcttagttattttgtactattatgacaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctattaaaattaccagaaagtcaagataaccatcttagttattttgtactattatgacaa 681
Query: 485 tatcccagacttcataattgaaaaaaattatcacatttacctgtgtgggttcatgtgaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatcccagacttcataattgaaaaaaattatcacatttacctgtgtgggttcatgtgaat 741
Query: 545 gtgtatgtagatgcatgggtaccc 568
||||||||||||||||||||||||
Sbjct: 742 gtgtatgtagatgcatgggtaccc 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 965
Length adjustment: 10
Effective length of query: 558
Effective length of database: 955
Effective search space: 532890
Effective search space used: 532890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_e10.g1 MSMg01no333_e10.g1 CHROMAT_FILE:
MSMg01no333_e10.g1 PHD_FILE: MSMg01no333_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:25 2005
(620 letters)
>mm_chr9_75023903_75024922
Length = 1020
Score = 1160 bits (600), Expect = 0.0
Identities = 615/620 (99%)
Strand = Plus / Minus
Query: 1 ttattaaatcaacagaatcctataaattaaaaacatacatataaagcaaaattctaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ttattaaatcaacagaatcctataaattaaaaacatacatataaagcaaaattctaaaaa 761
Query: 61 gctacatatggtattactgaatgtaatttcatattgacacacaaagaccagagatggagt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gctacatatgctattactgaatgtaatttcatattgacacacaaagaccagagatggagt 701
Query: 121 ttgtaagttcactagttttattacaatatttggaactcttgcttgtgaatgtacagatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttgtaagttcactagttttattacaatatttggaactcttgcttgtgaatgtacagatga 641
Query: 181 tagccaaaacttttaaaacttatttcagctctaagcattactgtaactgagaacataatg 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tagccaacacttttaaaacttatttcagctctaagcattactgtaactgagaacataatg 581
Query: 241 tcaaacttagaaagcttaggtttgaagtttgttgtctgctgggttgagagcacacaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcaaacttagaaagcttaggtttgaagtttgttgtctgctgggttgagagcacacaaacc 521
Query: 301 ttacctgtcatctccttcgcctgctccacaatgcggtggttgaggccccccttttcctgc 360
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 520 ttacctgtcatctccttcgcctgctccacaatgcggtggttgagggtctccttttcctgc 461
Query: 361 ttcagcaaagtattttcttccttcaagtttgacaccagctatgaaatgaaacaccaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttcagcaaagtattttcttccttcaagtttgacaccagctatgaaatgaaacaccaagct 401
Query: 421 gaggcggctgcagcagactgagatgtcccacacgacagtcactgactgtgcctcatgacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaggcggctgcagcagactgagatgtcccacacgacagtcactgactgtgcctcatgacc 341
Query: 481 tcaactacttattacttatgtcttgtcacctgtcacacttgtctcaaattaactctctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcaactacttattacttatgtcttgtcacctgtcacacttgtctcaaattaactctctcc 281
Query: 541 agagaaacttcataaaaccccctccaatagaggccttttctctgggctgctgcaagattc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agagaaacttcataaaaccccctccaatagaggccttttctctgggctgctgcaagattc 221
Query: 601 tgcatttgctccttatgtcc 620
||||||||||||||||||||
Sbjct: 220 tgcatttgctccttatgtcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
