TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATGGAGTACTACTCACCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGAAATTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCA
AACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACT
CAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTG
GGAAAAAAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGCTGAG
ATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCAT
AATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATT
GAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGC
AAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCT
CCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAA
CCCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTG
ACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGAA
AGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTACCGGGCATGCATGTAGAGCAC
ATATCTGTACGAGCAGCCACAATACCCAAACACATAAAACAAAATAACAA
AATAACAAAATAACAAAATAACAAAATAACTAACTAACTAACTAATTAAC
TAACTAACTAACTAACTAACTAACTAACTAACTAAATAAATAAATAAATA
AATAAATAAATAGATATGAAGACAATCTCAAGAAAGGTAGATAAAGAAAT
TCATATCTTCTTGTCCTCTTCTCCCCAACATTCCCCCCACCTCTCTCTGT
TATTTGGCTGCTAGAGGACAACATTTGGAGGTTAGTTTTCTCCTTCTACT
GTAGGATCTGGGGATTGAGCCTAGCTTGTCAGGTGTGCATGGAAAGAGGT
TTTGCTTAAGCCATCTTACTGTCTTAAATTATTTCTACTTTGAAGATAAT
GGAAGTGAGCATCACAATATGTCAGATGGGGTCATCTTAGTTATAAAATC
CTAAGAAACCTTTCCTTATGCCTGTTTAGCTTATTGTTTTCCTTCAGAAT
TTTCTAAGGGTCTGAATCCTTTAGAAAGTACAGGGTTGGTGTAGAGTGAG
TTACTCCTAGTTGCCGTATACTAGACACTCTTGACTCCCAGGTACTGTGA
TAATGATGTCTATGTGATAATGACATCT

Query= MSMg01no333_h18.g1 MSMg01no333_h18.g1 CHROMAT_FILE:
MSMg01no333_h18.g1 PHD_FILE: MSMg01no333_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:40 2005
         (594 letters)



>mm_chr9_25524655_25525650
          Length = 996

 Score =  801 bits (414), Expect = 0.0
 Identities = 519/596 (87%), Gaps = 66/596 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtaccgggcatgcatgtagagcacatatctgtacgagcagccacaatacccaaacac 60
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgtgccaggcatgcatgtagagcacatatctgtacgagcagccacaatacccaaacac 324

                                                                       
Query: 61  ataaaacaaaataacaaaataacaaaataacaaaataacaaaataactaactaactaact 120
           |||||||||| ||||||||||||||||||||||||||||||||                 
Sbjct: 325 ataaaacaaagtaacaaaataacaaaataacaaaataacaaaa----------------- 367

                                                                       
Query: 121 aattaactaactaactaactaactaactaactaactaactaaataaataaataaataaat 180
                                                  |||||||||||||||||||||
Sbjct: 368 ---------------------------------------taaataaataaataaataaat 388

                                                                       
Query: 181 aaataaatagatatgaagacaatctcaagaaaggtagataaagaaattcatatcttcttg 240
           ||||||        ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 389 aaataa--------gaagacaatctcaagaaaggtagataaagaaattcatgtcttctcg 440

                                                                       
Query: 241 tcctcttctccccaacattccccccacctctctctgttatttggctgctagaggacaaca 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcttctccccaacattccccccatctctctctgttatttggctgctagaggacaaca 500

                                                                       
Query: 301 tttggaggttagttttctccttctactgtaggatctggggattgagcctagcttgtcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttggaggttagttttctccttctactgtaggatctggggattgagcctagcttgtcagg 560

                                                                       
Query: 361 tgtgcatggaaagaggttttgcttaagccatcttactgtcttaaattatttctactttga 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtatggaaagaggttttgcttaagccatcttactgtcttaaattatttctactttga 620

                                                                       
Query: 421 agataatggaagtgagcatcacaatatgtcagatggggtcatcttagttataaaatccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agataatggaagtgagcatcacaatatgtcagatggggtcatcttagttataaaatccta 680

                                                                       
Query: 481 agaaacctttccttatgcctgtttagcttattgttttccttcagaattttctaagggtct 540
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 681 agaaacctttccttatgcctgtttagtttattgttttccttcagagttttctaagggtct 740

                                                                   
Query: 541 gaatcctttagaaagtacagggttggtgtagag--tgagttactcctagttgccgt 594
           |||||||||||||||| ||||||||||||||||  |||||||||||||| ||||||
Sbjct: 741 gaatcctttagaaagtccagggttggtgtagagagtgagttactcctagctgccgt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 996
Length adjustment: 10
Effective length of query: 584
Effective length of database: 986
Effective search space:   575824
Effective search space used:   575824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)