Query= MSMg01no334_g14.b1 MSMg01no334_g14.b1 CHROMAT_FILE:
MSMg01no334_g14.b1 PHD_FILE: MSMg01no334_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:50 2005
(597 letters)
>mm_chr9_85664653_85665649
Length = 997
Score = 590 bits (305), Expect = e-172
Identities = 320/325 (98%), Gaps = 2/325 (0%)
Strand = Plus / Minus
Query: 1 gtgttcacagcatctccaggagaggatggaaacagatattttggcattgcaaaaacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgttcacagcatctccaggagaggatggaaacagatattttggcattgcaaaaacatgg 265
Query: 61 acttcccactgattgtgctccca-ccccccctctttaagttatactttgattctccaagt 119
||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||
Sbjct: 264 acttcccactgattgtgct-ccacccccccccctttaagttatattttgattctccaagt 206
Query: 120 acagttgtactggctgagtttgtgagttaacttgacacaaactggagttatcacagagaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acagttgtactggctgagtttgtgagttaacttgacacaaactggagttatcacagagaa 146
Query: 180 aggagcctcccttgaggagagtcttccatgagatccagctgtaaggcattttctcaatta 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 145 aggagcctcccttgaggagagtcttccatgagatccagcagtaaggcattttctcaatta 86
Query: 240 gtgatcaagggtgggagggcccatcatgggtggtgccatctgtgggctggtggtcttggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gtgatcaagggtgggagggcccatcatgggtggtgccatctgtgggctggtggtcttggg 26
Query: 300 ttctataagaaaacaagctgagtaa 324
|||||||||||||||||||||||||
Sbjct: 25 ttctataagaaaacaagctgagtaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_g14.g1 MSMg01no334_g14.g1 CHROMAT_FILE:
MSMg01no334_g14.g1 PHD_FILE: MSMg01no334_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:50 2005
(532 letters)
>mm_chr9_85509383_85510313
Length = 931
Score = 975 bits (504), Expect = 0.0
Identities = 530/548 (96%), Gaps = 17/548 (3%)
Strand = Plus / Plus
Query: 1 attccacagcaatgatgccttgcattatgggtgtgcccagatggatctgtggcttggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 attccacagcaatgatgccttgcattatgggtgtgcccagatggatctgtggcttggact 256
Query: 61 caaggcaatgagaacatac----agagagagagagagagagagagagagagagagagaga 116
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaggcaatgagaacatacagagagagagagagagagagagagagagagagagagagaga 316
Query: 117 gagagattcacagttctacatgaagccatataaccatgactaagtctttataaagttcat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagagattcacagttctacatgaagccatataaccatgactaagtctttataaagttcat 376
Query: 177 gaatgaatacctcaagtagcttcaaagtggcagaagacaatgttcttttcatggcgcttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaatgaatacctcaagtagcttcaaagtggcagaagacaatgttcttttcatggcgcttt 436
Query: 237 gaaaataaatcccattcattagtgaagttaacaaaatgtgatgctttgacaccaaaaata 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 gaaaataaatcccattcattagtgaagttaacaaaatgtgatgctttgacaccaaaa-ta 495
Query: 297 atctagaatctagaaatgctctggcatatggcgtaaaacccccaaaggattattgaccga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 496 atctagaatctagaaatgctctggcatatggcgtaaaacccccaaaggattattgcccga 555
Query: 357 gtccagtgcctctgctctacatccagagggctctacccatgtggcttctctccaagtgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtccagtgcctctgctctacatccagagggctctacccatgtggcttctctccaagtgtg 615
Query: 417 gagctcctagtcaagcagctggcaccaacatgcagtagcctgtc------------tcac 464
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 616 gagctcctagtcaagcagctggcaccaacatgcagtagcctgtcctccttcgcctctcac 675
Query: 465 tcagagagatttgctgccacagccctctccttgatccctaaacagagcattaatttggag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcagagagatttgctgccacagccctctccttgatccctaaacagagcattaatttggag 735
Query: 525 gaattcac 532
||||||||
Sbjct: 736 gaattcac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space: 480762
Effective search space used: 480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
