Query= MSMg01no334_l19.b1 MSMg01no334_l19.b1 CHROMAT_FILE:
MSMg01no334_l19.b1 PHD_FILE: MSMg01no334_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:15 2005
(628 letters)
>mm_chr9_90070639_90071660
Length = 1022
Score = 1042 bits (539), Expect = 0.0
Identities = 607/639 (94%), Gaps = 20/639 (3%)
Strand = Plus / Minus
Query: 3 ggaattcaaaaaccatttcc-cctctacccaatagaaactgctgatctctgcaaaatgcc 61
|||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ggaattaaaaaacca-gtccacctctacccaatagaaactgctgatctctgcaaaatgcc 712
Query: 62 tgatcgggagcctgttaattctaggtattaggtctcactgtgcacaagtctggacacaca 121
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgatcaggagcctgttaagtctaggtattaggtctcactgtgcacaagtctggacacaca 652
Query: 122 ctgggttctgtcccctgggactcagaagaggtgaggtgaatcctgctaactataggagat 181
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctgggttctgtctcctgggacacagaagaggtgaggtgaatcctgctaactataggagat 592
Query: 182 cctagccaagctgtgacctctttcagtctgagcccctaaggggtgacactgggaagaacc 241
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 591 cctagccaagctgtgacctctttcagtctgagcccctaaggggtgacattgggaagaacc 532
Query: 242 tggaggtgagaaccctgtcctgcccttcctcactcttgcaaagcgactcgagtgagaccc 301
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 531 tggaggtgagaaccctgtcctgcccttcctcactcaagcaaagcgactcgagtgagaccc 472
Query: 302 ctgaacagaaggcttcagaggccttttgctccctaaagagcaaggagccaatgatgatgt 361
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 471 ctgaacagaaggcttcagaggc------ctccctaaagagcaaggaaccaatgatgatgt 418
Query: 362 ccaatcagaggactgcctcagaactgcacttcctcatgaggacttgggcagagggactgg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaatcagaggactgcctcagaactgcacttcctcatgaggacttgggcagagggactgg 358
Query: 422 gaggttagctgataaacagcagccatggcttcagctcctttttagagccctggattcaca 481
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 357 gaggttagctgataaacagcagccatggcttcaactcctttttagagccctggattcaca 298
Query: 482 gccatacatcctagctgaccacagagacacttctcttaaggtgacagcaagtgagcccta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gccatacatcctagctgaccacagagacacttctcttaaggtgacagcaagtgagcccta 238
Query: 542 gccttgggccagacagcagtacagagat-cttt-tc----------tgcaaggatcagcc 589
||||||||||| |||||||||||||||| |||| || ||||||||||||||
Sbjct: 237 gccttgggccaaacagcagtacagagatcctttctcctgggaggcttgcaaggatcagcc 178
Query: 590 tggtggcctgcaggttcctccctgcccctcaaggagggg 628
|||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tggtggcctgcaggttcctccctgcccctcaaggagggg 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1022
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1012
Effective search space: 625416
Effective search space used: 625416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_l19.g1 MSMg01no334_l19.g1 CHROMAT_FILE:
MSMg01no334_l19.g1 PHD_FILE: MSMg01no334_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:16 2005
(289 letters)
>mm_chr9_89932051_89932739
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Plus
Query: 1 atcagggttagaaagagagccatgagccacaccagttgcaaaatttacgagaattcccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagggttagaaagagagccatgagccacaccagttgcaaaatttacgagaattcccac 260
Query: 61 tcagtggttaacactcgtcatattttaatgcagtggcttaagacacagacttaccccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtggttaacactcgtcatattttaatgcagtggcttaagacacagacttaccccatt 320
Query: 121 ggccttaaatgtctgatatatcttctgcacctcccaagtgcttggattgcaggtgtgcat 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ggccttaaatgtctgatatatcttctgcacctcccaagtgcttggattacaggtgtgcat 380
Query: 181 caccatacctggcttatgcaatacatatgagttgaggagaagtgttgaaacgatgtctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 caccatacctggcttatgcaatacatatgagttgaggagaagtgttgaaacaatgtctca 440
Query: 241 tgttgcccaggctgacccaaacttgccttggtcttgaaaggaaataaaa 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgcccaggctgacccaaacttgccttggtcttgaaaggaaataaaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
